Browse Element(s) Details


OsAffx.29773.1.S1_at

Description tigr:9637.m00672
TID=OsAffx.29773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09170OsAffx.8939.1.S1_x_at5/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.8939.1.S1_at4/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.9036.1.S1_at1/119+4909504..4909958hypothetical protein
LOC_Os09g09180NANA9+4913542..4914021hypothetical protein
LOC_Os09g09190Os.24831.3.S1_s_at9/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.1.S1_x_at6/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.3.S1_x_at4/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.55127.1.S1_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.4.S1_x_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09200Os.53142.1.S1_at2/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09200Os.46314.2.S1_x_at1/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09210OsAffx.29773.1.S1_s_at11/119+4928367..4931323expressed protein
LOC_Os09g09210OsAffx.29773.1.S1_at11/119+4928367..4931323expressed protein
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29773.1.S1_at--283--8651Chr09:4928941..4928965 (25 bp)
TGTGGACAACTTCTCTATTCCCTCA
LOC_Os09g09210
OsAffx.29773.1.S1_at--211--10591Chr09:4928931..4928955 (25 bp)
TTCTCTATTCCCTCATTGCTGAAGG
LOC_Os09g09210
OsAffx.29773.1.S1_at--255--91Chr09:4928925..4928949 (25 bp)
ATTCCCTCATTGCTGAAGGTTGGCT
LOC_Os09g09210
OsAffx.29773.1.S1_at--740--3591Chr09:4928918..4928942 (25 bp)
CATTGCTGAAGGTTGGCTGGTCTAC
LOC_Os09g09210
OsAffx.29773.1.S1_at--609--3831Chr09:4928913..4928937 (25 bp)
CTGAAGGTTGGCTGGTCTACGATTT
LOC_Os09g09210
OsAffx.29773.1.S1_at--852--2891Chr09:4928910..4928934 (25 bp)
AAGGTTGGCTGGTCTACGATTTGGC
LOC_Os09g09210
OsAffx.29773.1.S1_at--730--8591Chr09:4928901..4928925 (25 bp)
TGGTCTACGATTTGGCCCTCTCTTC
LOC_Os09g09210
OsAffx.29773.1.S1_at--47--9952Chr09:4928896..4928920 (25 bp)
TACGATTTGGCCCTCTCTTCTGTTC
LOC_Os09g09210
OsAffx.29773.1.S1_at--1087--211Chr09:4928892..4928916 (25 bp)
ATTTGGCCCTCTCTTCTGTTCCCTA
LOC_Os09g09210
OsAffx.29773.1.S1_at--1000--3411Chr09:4928863..4928887 (25 bp)
CAGAAACCGCGATTGGTTTGTCATT
LOC_Os09g09210
OsAffx.29773.1.S1_at--100--2612Chr09:4928859..4928883 (25 bp)
AACCGCGATTGGTTTGTCATTCGGG
LOC_Os09g09210
Target Sequence 
TGTGGACAACTTCTCTATTCCCTCATTGCTGAAGGTTGGCTGGTCTACGATTTGGCCCTCTCTTCTGTTCCCTAGCAGCA
GAAACCGCGATTGGTTTGTCATTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis