Browse Element(s) Details


OsAffx.29775.1.S1_at

Description tigr:9637.m00678
TID=OsAffx.29775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0927010/11Dihydroflavonol-4-reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09260OsAffx.29774.1.S1_at11/119+4960788..4961434hypothetical protein
LOC_Os09g09270OsAffx.29775.1.S1_at10/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09270OsAffx.29033.1.S1_at1/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29775.1.S1_at--344--971Chr09:4962618..4962642 (25 bp)
AGGAGCTCCTTCACCGTGGCTATGT
LOC_Os09g09270
OsAffx.29775.1.S1_at--968--1771Chr09:4962606..4962630 (25 bp)
ACCGTGGCTATGTTGTGAGAGGAAC
LOC_Os09g09270
OsAffx.29775.1.S1_at--155--951Chr09:4962592..4962611 (20 bp)
AGGAACTGCAAGAGACCCCTCTGCT
LOC_Os09g09270
OsAffx.29775.1.S1_at--767--2771NONE
AAGAGACCCCTCTGCTCAGAAGTAC
NONE
OsAffx.29775.1.S1_at--398--5311Chr09:4962324..4962348 (25 bp)
GAAGGAGCAGCAGAGAGGCTATCTC
LOC_Os09g09270
OsAffx.29775.1.S1_at--13--1331Chr09:4962311..4962335 (25 bp)
AGAGGCTATCTCTGTGCTACGCTAA
LOC_Os09g09270
OsAffx.29775.1.S1_at--536--3891Chr09:4962300..4962324 (25 bp)
CTGTGCTACGCTAATGTCATGGACT
LOC_Os09g09270
OsAffx.29775.1.S1_at--189--5711Chr09:4962279..4962303 (25 bp)
GACTACAACAGTCTCCGAGTTGCAT
LOC_Os09g09270
OsAffx.29775.1.S1_at--748--2131Chr09:4962272..4962296 (25 bp)
ACAGTCTCCGAGTTGCATTTGATGG
LOC_Os09g09270
OsAffx.29775.1.S1_at--736--10531Chr09:4962233..4962257 (25 bp)
TTCATGTTGCATCACCAGTATCCAA
LOC_Os09g09270
OsAffx.29775.1.S1_at--1012--4951Chr09:4962226..4962249 (24 bp)
GCATCACCAGTATCCAATGATCCAA
LOC_Os09g09270
Target Sequence 
AGGAGCTCCTTCACCGTGGCTATGTTGTGAGAGGAACTGCAAGAGACCCCTCTGCTCAGAAGTACCCCCATTTGCAAACA
CTTGAAGGAGCAGCAGAGAGGCTATCTCTGTGCTACGCTAATGTCATGGACTACAACAGTCTCCGAGTTGCATTTGATGG
ATGTGATGGGGTCTTTCATGTTGCATCACCAGTATCCAATGATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis