Browse Element(s) Details


OsAffx.17626.1.S1_s_at

Description tigr:9637.m00754
TID=OsAffx.17626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0994411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09900Os.26886.6.S1_s_at7/119+5376937..5378678hypothetical protein
LOC_Os09g09900Os.26886.2.S1_s_at7/119+5376937..5378678hypothetical protein
LOC_Os09g09900OsAffx.16467.1.S1_at6/119+5376937..5378678hypothetical protein
LOC_Os09g09900OsAffx.3425.1.S1_at1/119+5376937..5378678hypothetical protein
LOC_Os09g09910NANA9+5384521..5388015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g09920OsAffx.17624.1.S1_at10/119+5390032..5391931hypothetical protein
LOC_Os09g09930Os.9103.1.S1_at11/119+5394176..5395710heavy metal-associated domain containing protein, expressed
LOC_Os09g09940OsAffx.17625.1.S1_at11/119+5399926..5400679hypothetical protein
LOC_Os09g09944OsAffx.17626.1.S1_s_at11/119+5401725..5403107expressed protein
LOC_Os09g09950Os.13861.1.S1_at2/119+5413271..5418455retrotransposon protein, putative, unclassified, expressed
LOC_Os09g09960NANA9+5419149..5423600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09970Os.46314.2.S1_x_at6/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.47114.1.S1_x_at1/119+5425226..5427804retrotransposon protein, putative, unclassified
LOC_Os09g09970Os.10731.2.A1_at1/119+5425226..5427804retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17626.1.S1_s_at--477--5092Chr12:9670142..9670163 (22 bp)
GCACCGACACGGGATAATCCGGCTA
NONE
OsAffx.17626.1.S1_s_at--1082--10352Chr09:5402637..5402661 (25 bp)
TTTTTCCGTGCGGTTCGCATTATTT
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--647--7871Chr09:5402626..5402650 (25 bp)
GGTTCGCATTATTTGATTATCCCGT
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--11--2451Chr09:5402574..5402598 (25 bp)
AAAATGATTATCAACCCGACCGCAC
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--809--6631Chr09:5402527..5402551 (25 bp)
GTTGAGCTACCGCACGTAAAAATTT
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--763--171Chr09:5402500..5402524 (25 bp)
ATTTTTTCAGACGACTGTCTCCGGA
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--431--5131Chr09:5402472..5402496 (25 bp)
GCAAAATCCCCGCTCGGAAAAATGA
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--99--10691Chr09:5402445..5402469 (25 bp)
TTGACCGTCCGGAAAAATAGTTCAT
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--901--6791Chr09:5402408..5402432 (25 bp)
GTTTTCACTAAACACTGGCCAAAGA
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--824--1231Chr09:5402346..5402370 (25 bp)
AGTTCCTCATTACGTGGACGCTAAT
LOC_Os09g09944
OsAffx.17626.1.S1_s_at--1112--8731Chr09:5402322..5402346 (25 bp)
TGTAATAGCACATGACCTCATTCGA
LOC_Os09g09944
Target Sequence 
GCACCGACACGGGATAATCCGGCTAGGGTTAGGTTTTTTTTTACTTTTTCGTTTTTTTTTTCCGTGCGGTTCGCATTATT
TGATTATCCCGTGCGGTCCACTTAACCCGATCGCACGGGAAAATGATTATCAACCCGACCGCACGGGAAAATGATTATCC
TGTGCGGTTGAGCTACCGCACGTAAAAATTTTCATTTTTTCAGACGACTGTCTCCGGACAGGCAAAATCCCCGCTCGGAA
AAATGAATTTGACCGTCCGGAAAAATAGTTCATGTAGTAGTGGTTGTTTTCACTAAACACTGGCCAAAGAAAAGTGTCGT
GATGTTTAAAACAAACTTTAATTTTCAAGTTCCTCATTACGTGGACGCTAATGTAATAGCACATGACCTCATTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17626.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis