Browse Element(s) Details


OsAffx.17661.1.S1_at

Description tigr:9637.m00945
TID=OsAffx.17661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY143978 At4g25340T30C3_20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1227011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12250OsAffx.17660.1.S1_at11/119+6974494..6977083hypothetical protein
LOC_Os09g12260OsAffx.29813.1.S1_at11/119+6987163..6987744hypothetical protein
LOC_Os09g12270OsAffx.17661.1.S1_at11/119+6989893..6993385peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os09g12290Os.4417.1.S1_at11/119+6994060..7008477Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os09g12300OsAffx.29815.1.S1_x_at2/119+7014998..7015707serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g12310Os.54989.1.S1_at8/119+7016861..7019880Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17661.1.S1_at--264--8291Chr09:6992320..6992340 (21 bp)
GGCTTCTAATGGCAGCAAGGTTTCT
LOC_Os09g12270
OsAffx.17661.1.S1_at--608--8711Chr09:6992770..6992874 (25 bp)
TGTCGGTATTTGTGGCATGCGTGTT
LOC_Os09g12270
OsAffx.17661.1.S1_at--110--7251Chr09:6992896..6993067 (25 bp)
GTCCCACCAGCTATGTGTTATGGCA
LOC_Os09g12270
OsAffx.17661.1.S1_at--935--2711Chr09:6993141..6993165 (25 bp)
AAGCACATCATGAGCTTCTGCATGC
LOC_Os09g12270
OsAffx.17661.1.S1_at--319--9091Chr09:6993163..6993187 (25 bp)
TGCTCATGTCCTATGCCGAAGGCTG
LOC_Os09g12270
OsAffx.17661.1.S1_at--1044--5291Chr09:6993180..6993204 (25 bp)
GAAGGCTGCGACACGGGCTCATGCA
LOC_Os09g12270
OsAffx.17661.1.S1_at--304--7591Chr09:6993194..6993218 (25 bp)
GGGCTCATGCATCTCTATGTAGCTA
LOC_Os09g12270
OsAffx.17661.1.S1_at--301--6971Chr09:6993212..6993236 (25 bp)
GTAGCTACATGCCATGCTGGAATTT
LOC_Os09g12270
OsAffx.17661.1.S1_at--426--5211Chr09:6993231..6993255 (25 bp)
GAATTTTGTTTCTCCCAGGTGATGG
LOC_Os09g12270
OsAffx.17661.1.S1_at--842--4271Chr09:6993261..6993285 (25 bp)
CCTGTCTTCTGCTTTTGTTCTAGAA
LOC_Os09g12270
OsAffx.17661.1.S1_at--21--8671Chr09:6993320..6993344 (25 bp)
TGTGGTCAGACTACAACTCCAGCTG
LOC_Os09g12270
Target Sequence 
GGCTTCTAATGGCAGCAAGGTTTCTATCAAATATGTTGGCACACTACAGGATGGGAAGATTGTTGAGTCTAATGTTGGTG
AAAAGCCCTACAAATTCAAGCTTGGTGCTGGGAAAGTAATTCGAGGATGGGATGTCGGTATTTGTGGCATGCGTGTTGGG
GACAAAAGAAAGCTCACCGTCCCACCAGCTATGTGTTATGGCAGTAAAGCAATAGGAGAAGTACCCAAAAATTCATCAAT
CATCTACGAAATCGAGTTAGTGAAGGTCAGATCCAAAAGCACATCATGAGCTTCTGCATGCTCATGTCCTATGCCGAAGG
CTGCGACACGGGCTCATGCATCTCTATGTAGCTACATGCCATGCTGGAATTTTGTTTCTCCCAGGTGATGGCATGCCCTG
TCTTCTGCTTTTGTTCTAGAAGGAATTATTTTGTACTACCCTACAGATTGTAATCTGTGGTCAGACTACAACTCCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis