Browse Element(s) Details


OsAffx.17663.1.S1_at

Description tigr:9637.m00965
TID=OsAffx.17663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1243011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12400OsAffx.6250.1.S1_at11/119+7093058..7093822hypothetical protein
LOC_Os09g12410OsAffx.29816.2.S1_at11/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12410OsAffx.29816.1.S1_at1/119+7094651..7096308hAT dimerisation domain-containing protein, putative
LOC_Os09g12420OsAffx.6251.1.S1_at11/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.18.S1_x_at10/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420Os.35344.3.S1_x_at8/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_at5/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12420OsAffx.22940.5.S1_x_at3/119+7104780..7114076transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g12430OsAffx.17663.1.S1_at11/119+7115096..7116458hypothetical protein
LOC_Os09g12440OsAffx.29817.1.S1_at11/119+7118890..7119611hypothetical protein
LOC_Os09g12450NANA9+7122716..7123150hypothetical protein
LOC_Os09g12460OsAffx.17665.1.S1_at11/119+7126341..7127357hypothetical protein
LOC_Os09g12470OsAffx.6252.1.S1_at10/119+7128773..7129316hypothetical protein
LOC_Os09g12480OsAffx.17666.1.S1_at9/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.2.S1_a_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.39942.1.S1_x_at1/119+7132650..7144978hypothetical protein
LOC_Os09g12480Os.27541.1.A1_at1/119+7132650..7144978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17663.1.S1_at--932--10551Chr09:7116225..7116249 (25 bp)
TTCTTCCTCCATGGAGATCCAGTGG
LOC_Os09g12430
OsAffx.17663.1.S1_at--430--6171Chr09:7116057..7116080 (24 bp)
GAGGATCAGAAGTAGCGCCACCGTC
LOC_Os09g12430
OsAffx.17663.1.S1_at--294--1791Chr09:7116038..7116062 (25 bp)
ACCGTCTGTTAGCACTGGTGGGAAT
LOC_Os09g12430
OsAffx.17663.1.S1_at--843--8911Chr09:7115945..7115969 (25 bp)
TGAGCTACAGTCACCATTCGTGGTA
LOC_Os09g12430
OsAffx.17663.1.S1_at--6--2791Chr09:7115902..7115926 (25 bp)
AAGAGACCCGATCCTAGCATACTAG
LOC_Os09g12430
OsAffx.17663.1.S1_at--960--851Chr09:7115857..7115881 (25 bp)
ATGGCTTTTACCGATTCAGAGTCAA
LOC_Os09g12430
OsAffx.17663.1.S1_at--33--7871Chr09:7115719..7115743 (25 bp)
GGTATCAATCAAGCACCCATCGTTC
LOC_Os09g12430
OsAffx.17663.1.S1_at--865--511Chr09:7115701..7115725 (25 bp)
ATCGTTCCCCATCAGATTAAAGCTT
LOC_Os09g12430
OsAffx.17663.1.S1_at--346--6251Chr09:7115641..7115665 (25 bp)
GATGGATACCGATTGCCTCAACTTA
LOC_Os09g12430
OsAffx.17663.1.S1_at--344--7231Chr09:7115190..7115214 (25 bp)
GTCGCTAGTCCCACGAATCTGAGGA
LOC_Os09g12430
OsAffx.17663.1.S1_at--237--9071Chr09:7115164..7115188 (25 bp)
TGCATATTCGTGTGACTCTACTCTG
LOC_Os09g12430
Target Sequence 
TTCTTCCTCCATGGAGATCCAGTGGGTAGGAGGATCAGAAGTAGCGCCACCGTCTGTTAGCACTGGTGGGAATACAGAGC
TAGTAGAACAAGGAAATGATAGGGTGCCTGCAATGACTAAGATTGTGGTAGAACCAAACGCTGAGCTACAGTCACCATTC
GTGGTAAAACACCATCTATTACTCAAGAGACCCGATCCTAGCATACTAGATGAATTGTACAGCTTGACTATGGCTTTTAC
CGATTCAGAGTCAAAACAGACCGATTGGGTATCAATCAAGCACCCATCGTTCCCCATCAGATTAAAGCTTGAAGATATCC
AGGAAACAGTAAAACCTGGAGGATTGATGGATACCGATTGCCTCAACTTAGCTGTGAGAAATTTGGCAACAGAGGATGCT
GAAAATTTTAAGAACACTGAGTGTTTGGGTTGGAGGCATTACGTTAAATCAGATTGGACGCAACTGGTCGCTAGTCCCAC
GAATCTGAGGATTGCATATTCGTGTGACTCTACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis