Browse Element(s) Details


OsAffx.17788.1.S1_at

Description tigr:9637.m01695
TID=OsAffx.17788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to Helix pomatia br-1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1998011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17788.1.S1_at--159--6351Chr09:11958339..11958363 (25 bp)
GATGCGGCCCAGGACATACAGATTA
LOC_Os09g19980
OsAffx.17788.1.S1_at--1141--9811Chr09:11959072..11959093 (22 bp)
TAAAGCCAGGGCAGTCTGTACATAT
LOC_Os09g19980
OsAffx.17788.1.S1_at--729--7291Chr09:11959104..11959128 (25 bp)
GTGCGCCTGGACATCGAAGAGTTAA
LOC_Os09g19980
OsAffx.17788.1.S1_at--759--2991Chr09:11959197..11959221 (25 bp)
AATGCTGCCGCTATGGTAAAAGACC
LOC_Os09g19980
OsAffx.17788.1.S1_at--114--1711Chr09:11959219..11959241 (23 bp)
ACCACTTTGGTTTGCAACTACAGCC
LOC_Os09g19980
OsAffx.17788.1.S1_at--1002--10211Chr09:11959433..11959457 (25 bp)
TATTGCAATTGCTGGTCTTGGCTGG
LOC_Os09g19980
OsAffx.17788.1.S1_at--2--8631Chr09:11959508..11959532 (25 bp)
TGGTGTCGATGTCGTCTCCAGAAAC
LOC_Os09g19980
OsAffx.17788.1.S1_at--1035--3411Chr09:11959526..11959550 (25 bp)
CAGAAACTCCCTTGTCCATGAGAGG
LOC_Os09g19980
OsAffx.17788.1.S1_at--131--6171Chr09:11959563..11959587 (25 bp)
GAGGAAGCCGGGTTCACAGTTTCGA
LOC_Os09g19980
OsAffx.17788.1.S1_at--14--1251Chr09:11959588..11959612 (25 bp)
AGATTGTCTCTCAGGCGGATAGCAT
LOC_Os09g19980
OsAffx.17788.1.S1_at--207--351Chr09:11959657..11959681 (25 bp)
ATAACAAAGCCAATTCATCTCCCTC
LOC_Os09g19980
Target Sequence 
GATGCGGCCCAGGACATACAGATTAAAGCCAGGGCAGTCTGTACATATTGGAGGGCTGGTGCGCCTGGACATCGAAGAGT
TAACTGTAGGATCAGTTTATGTAACGGTATGGGCATCACCACTTGTCCCACTTCACATGGGGAAGACGGAAAATGCTGCC
GCTATGGTAAAAGACCACTTTGGTTTGCAACTACAGCCTCCTATTGGCCAACAACGGGTAAACGAACTAGGTAAATGGGT
GAGGAAGCAGTTCAAAGTTTCTGGGAACAGTTGGGATGTGAATTCCAAGGATATTGCAATTGCTGGTCTTGGCTGGTTTG
GAATAGGTCTGAAAGGAGAAGCGGTATTAGGACTATGGACATATGATGGTGTCGATGTCGTCTCCAGAAACTCCCTTGTC
CATGAGAGGGCAACAATATTTGAGGAAGCCGGGTTCACAGTTTCGAAGATTGTCTCTCAGGCGGATAGCATGGCAAATAG
GCTAAAGAACCCTAAGAAAATAAACAAGAAGAAGGATAACAAAGCCAATTCATCTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis