Browse Element(s) Details


OsAffx.17908.1.S1_x_at

Description tigr:9637.m02302
TID=OsAffx.17908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2641011/11
LOC_Os04g393701/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17908.1.S1_x_at--593--6771Chr09:15949557..15949581 (25 bp)
GTTATCGTCGGTAACCGCAGCAAAC
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--1111--10411Chr09:15949558..15949582 (25 bp)
TTATCGTCGGTAACCGCAGCAAACT
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--779--10131Chr09:15949559..15949583 (25 bp)
TATCGTCGGTAACCGCAGCAAACTG
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--916--7171Chr09:15949563..15949583 (21 bp)
GTCGGTAACCGCAGCAAACTGCCGA
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--645--7831Chr09:15949566..15949880 (25 bp)
GGTAACCGCAGCAAACTGCCGACTG
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--753--1491Chr09:15949575..15949889 (25 bp)
AGCAAACTGCCGACTGCGACGGCTA
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--888--5131Chr09:15949576..15949890 (25 bp)
GCAAACTGCCGACTGCGACGGCTAC
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--381--2171Chr09:15949873..15949892 (20 bp)
AAACTGCCGACTGCGACGGCTACGG
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--62--5731Chr09:15949876..15949900 (25 bp)
GACTGCGACGGCTACGGCTGTGGCT
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--723--3891Chr09:15949893..15949917 (25 bp)
CTGTGGCTGCGGCTGCGCATAGTGA
LOC_Os09g26410
OsAffx.17908.1.S1_x_at--237--4592Chr09:15949907..15949931 (25 bp)
GCGCATAGTGAGTGCGGCACTGTTC
LOC_Os09g26410
Target Sequence 
GTTATCGTCGGTAACCGCAGCAAACTGCCGACTGCGACGGCTACGGCTGTGGCTGCGGCTGCGCATAGTGAGTGCGGCAC
TGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17908.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis