Browse Element(s) Details


OsAffx.17925.1.S1_at

Description tigr:9637.m02382
TID=OsAffx.17925.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2719011/11RWP-RK domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27140Os.15572.1.S1_at9/119+16504479..16507811expressed protein
LOC_Os09g27150OsAffx.6412.1.S1_at11/119+16508512..16509982Protein kinase domain containing protein
LOC_Os09g27160Os.55222.1.S1_at11/119+16515132..16516766expressed protein
LOC_Os09g27160Os.56118.1.S1_at9/119+16515132..16516766expressed protein
LOC_Os09g27170NANA9+16518774..16519127hypothetical protein
LOC_Os09g27180NANA9+16520438..16524392retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g27190OsAffx.17925.1.S1_at11/119+16529343..16533773RWP-RK domain containing protein
LOC_Os09g27200NANA9+16534787..16535756hypothetical protein
LOC_Os09g27210Os.25110.1.S1_a_at10/119+16542047..16548778lecithine cholesterol acyltransferase, putative, expressed
LOC_Os09g27220OsAffx.17926.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_at11/119+16551721..16553781expressed protein
LOC_Os09g27220Os.50944.1.S1_x_at11/119+16551721..16553781expressed protein
LOC_Os09g27230OsAffx.17927.1.S1_at11/119+16554670..16556678expressed protein
LOC_Os09g27240Os.18030.1.S1_at11/119+16557394..16560749Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17925.1.S1_at--500--2811Chr09:16532969..16532993 (25 bp)
AAGATCTCTGGCCATTTTACCACCT
LOC_Os09g27190
OsAffx.17925.1.S1_at--9--10332Chr09:16537067..16537091 (25 bp)
TTTACCACCTGCTCCCAAGAAAAAT
NONE
OsAffx.17925.1.S1_at--899--2491Chr09:16533010..16533034 (25 bp)
AACATGGCAAAGCTCCTGCAACGGA
LOC_Os09g27190
OsAffx.17925.1.S1_at--140--5371Chr09:16533054..16533078 (25 bp)
GAAGAGCCACTTCTCCTTGTGCAAA
LOC_Os09g27190
OsAffx.17925.1.S1_at--444--1451Chr09:16533109..16533131 (23 bp)
AGAAGTTTACTTTCCCTGATCAGCG
LOC_Os09g27190
OsAffx.17925.1.S1_at--1117--2311Chr09:16533278..16533302 (25 bp)
AAAGTGCTGCTCATATTGGTCTAAG
LOC_Os09g27190
OsAffx.17925.1.S1_at--328--2431Chr09:16533323..16533347 (25 bp)
AAAACCTCTGCAGGGCTAATGACTT
LOC_Os09g27190
OsAffx.17925.1.S1_at--228--9771Chr09:16533339..16533363 (25 bp)
TAATGACTTGCCCAGATGGCCATAT
LOC_Os09g27190
OsAffx.17925.1.S1_at--590--1411Chr09:16533489..16533510 (22 bp)
AGACAGATCGCTAGTTTGGACAACA
LOC_Os09g27190
OsAffx.17925.1.S1_at--787--3591Chr09:16533552..16533576 (25 bp)
CTTGGCAAAGCGGTTCAGGGTGTTA
LOC_Os09g27190
OsAffx.17925.1.S1_at--783--2332Chr09:16537665..16537689 (25 bp)
AAAGCTTTCAAGCTCCGCAAGGAAA
NONE
Target Sequence 
AAGATCTCTGGCCATTTTACCACCTGCTCCCAAGAAAAATCAACATGGCAAAGCTCCTGCAACGGAAAGTAATTCTTCCT
TGGTAGAAGAGCCACTTCTCCTTGTGCAAACTGACCAACCAGCAGCTATTGGCAAGAGAAAGAAGTTTACTTTCCCTGAT
CAGCGCAAACGAGTTAAGACAATGACAAAGAAGGACTTGGAATCCTACTTCCACATCACACAAAAAAGTGCTGCTCATAT
TGGTCTAAGTATTGGCACAACTGCACTCAAAAACCTCTGCAGGGCTAATGACTTGCCCAGATGGCCATATAGACAGATCG
CTAGTTTGGACAACAAGTTCAACAACAATTTGAAGAAACAGATCACTGGGTGGAATCTTGGCAAAGCGGTTCAGGGTGTT
ACTAAAGCTTTCAAGCTCCGCAAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis