Browse Element(s) Details


OsAffx.17942.1.S1_at

Description tigr:9637.m02486
TID=OsAffx.17942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphate transport protein, mitochondrial (imported) - Arabidopsis thaliana (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2816011/11Phosphate carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28190OsAffx.6425.1.S1_at11/119+17105645..17106890hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17942.1.S1_at--913--1931Chr09:17081441..17081465 (25 bp)
ACGGCTTCCCAAAGATCGTCAGGAA
LOC_Os09g28160
OsAffx.17942.1.S1_at--712--2591Chr09:17081464..17081582 (25 bp)
AACGAAAGCTATGCAGGTCTGTTCA
LOC_Os09g28160
OsAffx.17942.1.S1_at--990--10511Chr09:17081579..17081603 (25 bp)
TTCAGAGGCTTGGTTCCGCTTTGGG
LOC_Os09g28160
OsAffx.17942.1.S1_at--823--851Chr09:17081770..17081794 (25 bp)
ATGGCATACAAGCATCTCATCCCCA
LOC_Os09g28160
OsAffx.17942.1.S1_at--1136--5291Chr09:17081799..17081823 (25 bp)
GAAGGAGCAATGCAGCAAGCCTCTG
LOC_Os09g28160
OsAffx.17942.1.S1_at--114--2671Chr09:17081815..17081839 (25 bp)
AAGCCTCTGCAGCTTGGAGTCAGCT
LOC_Os09g28160
OsAffx.17942.1.S1_at--380--1171Chr09:17081832..17081856 (25 bp)
AGTCAGCTTCGGGAGTGGCTACATT
LOC_Os09g28160
OsAffx.17942.1.S1_at--100--8971Chr09:17081892..17081916 (25 bp)
TGACAACTTGGTCTCGTTTCTCAAC
LOC_Os09g28160
OsAffx.17942.1.S1_at--590--9371Chr09:17081905..17081929 (25 bp)
TCGTTTCTCAACAACTCCAAGGGCG
LOC_Os09g28160
OsAffx.17942.1.S1_at--184--4371Chr09:17081930..17082065 (25 bp)
CCACCGTTGGAGATGCTGTCAAGAA
LOC_Os09g28160
OsAffx.17942.1.S1_at--780--4731Chr09:17082055..17082079 (25 bp)
GCTGTCAAGAACCTTGGCCTCTGGG
LOC_Os09g28160
Target Sequence 
ACGGCTTCCCAAAGATCGTCAGGAACGAAAGCTATGCAGGTCTGTTCAGAGGCTTGGTTCCGCTTTGGGGGCGTCAGATT
CCTTATACTATGATGAAATTTGCGACGTACGAGAACATCGTGGAGATGGCATACAAGCATCTCATCCCCACACCGAAGGA
GCAATGCAGCAAGCCTCTGCAGCTTGGAGTCAGCTTCGGGAGTGGCTACATTGCTGGAGTCTTCTGCGCCGCCGTCTCGC
ACCCTGCTGACAACTTGGTCTCGTTTCTCAACAACTCCAAGGGCGCCACCGTTGGAGATGCTGTCAAGAACCTTGGCCTC
TGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis