Browse Element(s) Details


OsAffx.17948.1.S1_at

Description tigr:9637.m02514
TID=OsAffx.17948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calmodulin-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2850011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28520Os.57006.1.S1_at11/119+17349764..17351412expressed protein
LOC_Os09g28530NANA9+17353470..17353886hypothetical protein
LOC_Os09g28540OsAffx.6430.1.S1_at11/119+17355243..17356377hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17948.1.S1_at--875--9431Chr09:17331856..17331880 (25 bp)
TCGGCGACGTGTACCATCCGTTCAA
LOC_Os09g28500
OsAffx.17948.1.S1_at--1067--5731Chr09:17331861..17331885 (25 bp)
GACGTGTACCATCCGTTCAACGAGA
LOC_Os09g28500
OsAffx.17948.1.S1_at--1149--7431Chr09:17331864..17331888 (25 bp)
GTGTACCATCCGTTCAACGAGACGG
LOC_Os09g28500
OsAffx.17948.1.S1_at--1019--9971Chr09:17331867..17331891 (25 bp)
TACCATCCGTTCAACGAGACGGCGG
LOC_Os09g28500
OsAffx.17948.1.S1_at--146--3531Chr09:17331870..17331894 (25 bp)
CATCCGTTCAACGAGACGGCGGTGC
LOC_Os09g28500
OsAffx.17948.1.S1_at--572--3911Chr09:17331886..17331910 (25 bp)
CGGCGGTGCGCGAGAAGTTCAAGGA
LOC_Os09g28500
OsAffx.17948.1.S1_at--658--1211Chr09:17331901..17331925 (25 bp)
AGTTCAAGGAGTGGATCCGGCAGTT
LOC_Os09g28500
OsAffx.17948.1.S1_at--986--10471Chr09:17331903..17331927 (25 bp)
TTCAAGGAGTGGATCCGGCAGTTCG
LOC_Os09g28500
OsAffx.17948.1.S1_at--546--3531Chr09:17331974..17331998 (25 bp)
CATGCGCGCCGTGGGCGTGCGGTTC
LOC_Os09g28500
OsAffx.17948.1.S1_at--459--9731Chr09:17332006..17332030 (25 bp)
TCAAGTGCAGGCGCGGCATGAGCCA
LOC_Os09g28500
OsAffx.17948.1.S1_at--820--4691Chr09:17332018..17332042 (25 bp)
GCGGCATGAGCCACGCCGACGCGGA
LOC_Os09g28500
Target Sequence 
TCGGCGACGTGTACCATCCGTTCAACGAGACGGCGGTGCGCGAGAAGTTCAAGGAGTGGATCCGGCAGTTCGACACCGAC
GGCGACGGCCGCATCAGCCGCGACGAGCTGCGCCGCGCCATGCGCGCCGTGGGCGTGCGGTTCACGGGGATCAAGTGCAG
GCGCGGCATGAGCCACGCCGACGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis