Browse Element(s) Details


OsAffx.17968.1.S1_at

Description tigr:9637.m02723
TID=OsAffx.17968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F20B17.4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3044611/11Sodium/hydrogen exchanger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0009651biological_processresponse to salt stress
GO:0048366biological_processleaf development
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0015081molecular_functionsodium ion transporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17968.1.S1_at--817--2631Chr09:18544953..18544977 (25 bp)
AACCTCTTCAAGTATGCAGCTCTAG
LOC_Os09g30446
OsAffx.17968.1.S1_at--1012--6051Chr09:18544829..18544853 (25 bp)
GAGTTGCTTGTTTGTCCTTTTCCCT
LOC_Os09g30446
OsAffx.17968.1.S1_at--370--10591Chr09:18544723..18544786 (25 bp)
TTCTCGTACATGCTAGCTGAAGGCT
LOC_Os09g30446
OsAffx.17968.1.S1_at--190--6871Chr09:18544695..18544719 (25 bp)
GTTTGTCTGGTATTGTCTCTATTCT
LOC_Os09g30446
OsAffx.17968.1.S1_at--975--2811Chr09:18544506..18544530 (25 bp)
AAGATTCTCAGCGTTTTACAGCTCG
LOC_Os09g30446
OsAffx.17968.1.S1_at--1151--10331Chr09:18544492..18544516 (25 bp)
TTTACAGCTCGTTTTTTCCATCTAC
LOC_Os09g30446
OsAffx.17968.1.S1_at--1162--10651Chr09:18544477..18544501 (25 bp)
TTCCATCTACTTTCATCACTAGCAG
LOC_Os09g30446
OsAffx.17968.1.S1_at--403--2031Chr09:18544211..18544484 (25 bp)
ACTAGCAGAGGCTTTCGTATCTTTA
LOC_Os09g30446
OsAffx.17968.1.S1_at--342--2571Chr09:18543605..18543625 (21 bp)
AACTGTGCTTCTAATTGGAGGCTCA
LOC_Os09g30446
OsAffx.17968.1.S1_at--324--8171Chr09:18543578..18543601 (24 bp)
GGAACAATGCTTGAATCCCTGCAAC
LOC_Os09g30446
OsAffx.17968.1.S1_at--256--5511Chr09:18542945..18542969 (25 bp)
GAACAATGCTGGCTACCCTGGGCAA
LOC_Os09g30446
Target Sequence 
AACCTCTTCAAGTATGCAGCTCTAGGTGTTGAGAACCTTCATAATCTGGAGAGTTGCTTGTTTGTCCTTTTCCCTTACTT
CTCGTACATGCTAGCTGAAGGCTTTGGTTTGTCTGGTATTGTCTCTATTCTGTTTACTGGAATTGTTATGAAGAGATACA
CCTTCTATAACTTATCAGAAGATTCTCAGCGTTTTACAGCTCGTTTTTTCCATCTACTTTCATCACTAGCAGAGGCTTTC
GTATCTTTATATTACTTGCAAGGTCTTAGGGGGGCAATGGCTTTTGCCCTTGCACTTCAGTCTATTCATGATCTTCCTGA
AGGACATGGCGAGACAATTTTCACCGCTACCACATCTATTGTTGTTCTAACTGTGCTTCTAATTGGAGGCTCAACTGGAA
CAATGCTTGAATCCCTGCAACATAACTTTGATGGGAACAATGCTGGCTACCCTGGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis