Browse Element(s) Details


OsAffx.18012.1.S1_at

Description tigr:9637.m03064
TID=OsAffx.18012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3639011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18012.1.S1_at--997--1871Chr09:20997369..20997393 (25 bp)
ACGTTTACAGTACAGCATGGGCATC
LOC_Os09g36390
OsAffx.18012.1.S1_at--1056--411Chr09:20997344..20997368 (25 bp)
ATCATCCTCAAGCTCTGAACTGGCA
LOC_Os09g36390
OsAffx.18012.1.S1_at--806--2691Chr09:20997335..20997359 (25 bp)
AAGCTCTGAACTGGCAAATCTCCCG
LOC_Os09g36390
OsAffx.18012.1.S1_at--55--8991Chr09:20997329..20997353 (25 bp)
TGAACTGGCAAATCTCCCGCTGGCA
LOC_Os09g36390
OsAffx.18012.1.S1_at--585--2271Chr09:20997320..20997344 (25 bp)
AAATCTCCCGCTGGCAATAGCATGG
LOC_Os09g36390
OsAffx.18012.1.S1_at--93--9511Chr09:20997317..20997341 (25 bp)
TCTCCCGCTGGCAATAGCATGGGTG
LOC_Os09g36390
OsAffx.18012.1.S1_at--466--291Chr09:20997304..20997328 (25 bp)
ATAGCATGGGTGGTGACCTGCTGCA
LOC_Os09g36390
OsAffx.18012.1.S1_at--69--3851Chr09:20997284..20997308 (25 bp)
CTGCAGTATAGTGGGTGGTGTCCAT
LOC_Os09g36390
OsAffx.18012.1.S1_at--1078--7251Chr09:20997265..20997289 (25 bp)
GTCCATTGTCAACAAGGTGTGAACC
LOC_Os09g36390
OsAffx.18012.1.S1_at--857--2871Chr09:20997252..20997276 (25 bp)
AAGGTGTGAACCTGAACCAACGAGA
LOC_Os09g36390
OsAffx.18012.1.S1_at--237--2651Chr09:20997238..20997262 (25 bp)
AACCAACGAGAGGTGTTCGCGCTCG
LOC_Os09g36390
Target Sequence 
ACGTTTACAGTACAGCATGGGCATCATCATCCTCAAGCTCTGAACTGGCAAATCTCCCGCTGGCAATAGCATGGGTGGTG
ACCTGCTGCAGTATAGTGGGTGGTGTCCATTGTCAACAAGGTGTGAACCTGAACCAACGAGAGGTGTTCGCGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis