Browse Element(s) Details


OsAffx.18015.1.S1_at

Description tigr:9637.m03109
TID=OsAffx.18015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18015.1.S1_at--820--9491Chr09:21240107..21240131 (25 bp)
TCTCCGCGGATTTCGGGATCTGCAA
LOC_Os09g36820
OsAffx.18015.1.S1_at--863--9011Chr09:21240157..21240177 (21 bp)
TGCACCATGGCCATAAACAAGCGTA
LOC_Os09g36820
OsAffx.18015.1.S1_at--177--2131Chr09:21240724..21240748 (25 bp)
ACAGAAGTACTCTACTGGCAGGGTA
LOC_Os09g36820
OsAffx.18015.1.S1_at--99--171Chr09:21240897..21240921 (25 bp)
ATTTACATGGTCAATCCCCTAGAAC
LOC_Os09g36820
OsAffx.18015.1.S1_at--330--9091Chr09:21241350..21241374 (25 bp)
TGCTAAGAGCCAGTCACAGGGTATA
LOC_Os09g36820
OsAffx.18015.1.S1_at--770--331Chr09:21241372..21241396 (25 bp)
ATAAGGTTCCTTTCCCATGTTACAG
LOC_Os09g36820
OsAffx.18015.1.S1_at--936--211Chr09:21241540..21241564 (25 bp)
ATTTGTCCAGCAATGGTTCCACCAA
LOC_Os09g36820
OsAffx.18015.1.S1_at--313--3031Chr09:21241563..21241587 (25 bp)
AATCCACAGACATCAAGGTTCAGCT
LOC_Os09g36820
OsAffx.18015.1.S1_at--393--2311Chr09:21241700..21241722 (23 bp)
AAAGGTCCACATCTTGTAGCACCAA
LOC_Os09g36820
OsAffx.18015.1.S1_at--1044--3071Chr09:21241722..21241746 (25 bp)
AATCAATGCCCAAACCGGGATTACA
LOC_Os09g36820
OsAffx.18015.1.S1_at--644--6311Chr09:21241777..21241801 (25 bp)
GATGACATGCCCTCCAAAGAAAACG
LOC_Os09g36820
Target Sequence 
TCTCCGCGGATTTCGGGATCTGCAAGGGGAAGAGGAAAGATGGGATGGGCTGCACCATGGCCATAAACAAGCGTAAAGGA
TCATACTGCAAATTTCATTCATCGAAATCCTCACAGAAGTACTCTACTGGCAGGGTAGAGCTTAAGGGCGGAAACTTCAA
ATTTGCTTCAAAACTTCGTTCAGAAGGGATTTACATGGTCAATCCCCTAGAACGATCCAATTCAAGAAACCCATTACAAC
CAGTAAAAGTGATGTCAATAGATGGGTTAAAAAGGGCTTTGAGTAATGCAGATAGAGTGACTGCTAAGAGCCAGTCACAG
GGTATAAGGTTCCTTTCCCATGTTACAGGTAATATAGAATCAAATTTGTCCAGCAATGGTTCCACCAATCCACAGACATC
AAGGTTCAGCTCAAACAAAAGGTCCACATCTTGTAGCACCAAATCAATGCCCAAACCGGGATTACAAAAGCAAGAGCAAG
ATAACAAGAAAATGAAGATGACATGCCCTCCAAAGAAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis