Browse Element(s) Details


OsAffx.18040.1.S1_at

Description tigr:9637.m03230
TID=OsAffx.18040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F2D10.21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3792011/11DNA repair helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37870OsAffx.30179.1.S1_at11/119+21833773..21835113hypothetical protein
LOC_Os09g37880OsAffx.30180.2.S1_at11/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37880OsAffx.30180.4.S1_x_at1/119+21840875..21844761D-mannose binding lectin family protein
LOC_Os09g37890OsAffx.30180.3.S1_at11/119+21846101..21849537D-mannose binding lectin family protein
LOC_Os09g37900OsAffx.30182.1.S1_at11/119+21850940..21852804hypothetical protein
LOC_Os09g37910Os.57443.1.S1_x_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.7893.1.S1_at11/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37910Os.57484.1.S1_x_at2/119+21856391..21858472HMG1/2, putative, expressed
LOC_Os09g37920OsAffx.18040.1.S1_at11/119+21859936..21867685DNA repair helicase family protein, expressed
LOC_Os09g37930OsAffx.30183.1.S1_at11/119+21868379..21878106ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g37940OsAffx.30187.3.S1_at8/119+21878722..21879228hypothetical protein
LOC_Os09g37949Os.49814.1.S1_at11/119+21880684..21884141Protein kinase domain containing protein, expressed
LOC_Os09g37958NANA9+21886822..21888489legumin, putative
LOC_Os09g37967Os.55779.1.S1_at11/119+21891330..21892804Cupin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18040.1.S1_at--540--3631Chr09:21860773..21860797 (25 bp)
CTTGCTCTTGCAAAAACGCCTGTGT
LOC_Os09g37920
OsAffx.18040.1.S1_at--685--2611Chr09:21860745..21860769 (25 bp)
AACCCTCGGAGCACAAGTTGTTGCA
LOC_Os09g37920
OsAffx.18040.1.S1_at--79--8111Chr09:21860473..21860594 (25 bp)
GGACCGTCGAAGGATCAGGCTTTAA
LOC_Os09g37920
OsAffx.18040.1.S1_at--138--911Chr09:21860457..21860481 (25 bp)
AGGCTTTAAGTGCTCCCATAGGTAC
LOC_Os09g37920
OsAffx.18040.1.S1_at--1146--8831Chr09:21860402..21860426 (25 bp)
TGATCTCGAGTCCTTTGCGTACAAA
LOC_Os09g37920
OsAffx.18040.1.S1_at--254--2731Chr09:21860371..21860395 (25 bp)
AAGAAGGATCCTGTGCCGGTGAACA
LOC_Os09g37920
OsAffx.18040.1.S1_at--1156--4871Chr09:21860153..21860177 (25 bp)
GCTTAGGTTACCTGGCACAGCCAAA
LOC_Os09g37920
OsAffx.18040.1.S1_at--657--7931Chr09:21860104..21860128 (25 bp)
GGATTCGTCTGCTATATGCTCTGAA
LOC_Os09g37920
OsAffx.18040.1.S1_at--1136--3151Chr09:21860036..21860060 (25 bp)
AATTGCTGTGGGTTCTTTTTGTGTT
LOC_Os09g37920
OsAffx.18040.1.S1_at--836--2251Chr09:21859991..21860015 (25 bp)
AAATATGGGCATGCCTCTTCTGGGT
LOC_Os09g37920
OsAffx.18040.1.S1_at--321--9571Chr09:21859976..21860000 (25 bp)
TCTTCTGGGTCAATCTCTTCATGGA
LOC_Os09g37920
Target Sequence 
CTTGCTCTTGCAAAAACGCCTGTGTCACAACCCTCGGAGCACAAGTTGTTGCAACTGATTCGTCAAATCAACAATTTTGT
GATAAGGTAATTTTGTTTGATGATCTTCTGCATGTCAAGCATGGACCGTCGAAGGATCAGGCTTTAAGTGCTCCCATAGG
TACTGTTAAACCCATCTCACCCCCGCCAGTGATTGATCTCGAGTCCTTTGCGTACAAACCACTGAAGAAGGATCCTGTGC
CGGTGAACACAAGAAGGTCCAAGTTTTTTGTTGTTTATGTGAGCAGCTTAGGTTACCTGGCACAGCCAAATCCAGGAATG
GTGCATAATATGAAGGATTCGTCTGCTATATGCTCTGAAAGAACTGGGAAGTCAAGTACACTTCACAAGCGAATGGGGTG
CCAATTGCTGTGGGTTCTTTTTGTGTTGTTTTCCCCCTTCTGTAAGGAAATATGGGCATGCCTCTTCTGGGTCAATCTCT
TCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis