Browse Element(s) Details


OsAffx.18169.1.S1_x_at

Description tigr:9638.m00673
TID=OsAffx.18169.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0805011/11lecithine cholesterol acyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08022Os.4576.1.S1_at11/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08022Os.8999.3.S1_x_at1/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08026Os.50978.1.S1_at11/1110+4112944..4114434Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os10g08030NANA10+4117963..4121663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.379.1.S1_at11/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.28520.1.S1_at1/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08050OsAffx.18169.1.S1_x_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08050OsAffx.18169.1.S1_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08060NANA10+4134853..4136932transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08070NANA10+4137599..4138279hypothetical protein
LOC_Os10g08080NANA10+4140182..4143396hypothetical protein
LOC_Os10g08090OsAffx.22699.1.S1_x_at2/1110+4145100..4147678retrotransposon protein, putative, unclassified
LOC_Os10g08100NANA10+4148504..4150408retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.8473.1.S1_x_at9/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110Os.45173.3.S1_x_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08110OsAffx.20877.1.S1_at1/1110+4152193..4153924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08120NANA10+4154584..4157339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18169.1.S1_x_at--489--3551Chr10:4133830..4133854 (25 bp)
CATCGTGCTGCTGCCAGGGAACGGC
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--324--9111Chr10:4133822..4133846 (25 bp)
TGCTGCCAGGGAACGGCTGTAGCCA
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--494--1071Chr10:4133815..4133839 (25 bp)
AGGGAACGGCTGTAGCCAGCTCGAC
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--1156--1931Chr10:4133810..4133834 (25 bp)
ACGGCTGTAGCCAGCTCGACGCGGA
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--636--5911Chr10:4133787..4133811 (25 bp)
GAGCTCACCGAGCACTACGAGCCAT
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--1084--1491Chr10:4133777..4133801 (25 bp)
AGCACTACGAGCCATCGCCATGGGC
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--325--7991Chr10:4133709..4133733 (25 bp)
GGACGACGACGGTGGTTCCGGCTAT
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--168--6711Chr10:4133695..4133719 (25 bp)
GTTCCGGCTATGGAAGAACAGCACT
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--529--5371Chr10:4133683..4133707 (25 bp)
GAAGAACAGCACTGCACTGGGCGAC
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--575--8471Chr10:4133651..4133675 (25 bp)
TGGCGCTGTGCTACGCGGACCAGCT
LOC_Os10g08050
OsAffx.18169.1.S1_x_at--705--9451Chr10:4133576..4133600 (25 bp)
TCTGGACCCGCGTCGTGTCGTTCGG
LOC_Os10g08050
Target Sequence 
CATCGTGCTGCTGCCAGGGAACGGCTGTAGCCAGCTCGACGCGGAGCTCACCGAGCACTACGAGCCATCGCCATGGGCGC
CGGCGAGCTGCGGCGGCGCTGCGGCCGCGGGGAAGGGGAAGGGACGACGACGGTGGTTCCGGCTATGGAAGAACAGCACT
GCACTGGGCGACCCCGCGGTGGCGCTGTGCTACGCGGACCAGCTGCGGGTGGTGTACGACCGCGCCGTCGCCGACTACCG
CAACGTCGCCCGCGTCTGGACCCGCGTCGTGTCGTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18169.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis