Browse Element(s) Details


OsAffx.18208.1.S1_x_at

Description gb:NM_195213.1
DB_XREF= gi:37531785
TID=OsAffx.18208.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029P16.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1063011/11pectinesterase inhibitor domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10610OsAffx.18207.1.S1_at9/1110+5628870..5630712hypothetical protein
LOC_Os10g10620OsAffx.20662.1.S1_at11/1110+5632724..5633362pectinesterase inhibitor domain containing protein, expressed
LOC_Os10g10630OsAffx.18208.1.S1_x_at11/1110+5640314..5640979pectinesterase inhibitor domain containing protein
LOC_Os10g10640NANA10+5642147..5646868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10650NANA10+5650824..5651258transposon protein, putative, unclassified
LOC_Os10g10660NANA10+5652920..5655727retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10664NANA10+5657592..5658080hypothetical protein
LOC_Os10g10670OsAffx.23366.2.S1_s_at1/1110+5659037..5662460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10670OsAffx.23366.1.S1_at1/1110+5659037..5662460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10680Os.46314.3.S1_at2/1110+5664618..5669319transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g10680OsAffx.8264.1.S1_at1/1110+5664618..5669319transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18208.1.S1_x_at--465--4631Chr10:5640748..5640772 (25 bp)
GCGTTCCAGGACAGCCGCGTCAGGC
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--1048--4591Chr10:5640694..5640718 (25 bp)
GCGAGGCTACGGGACTTCTCGGCCA
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--291--9871Chr10:5640687..5640711 (25 bp)
TACGGGACTTCTCGGCCAGCCTCGA
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--599--4091Chr10:5640665..5640689 (25 bp)
CGACGAACTCGTCCACGGATCCGGG
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--1151--4691Chr10:5640604..5640628 (25 bp)
GCGGCTGTGCGAGACTGCGTGGGCA
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--236--8351Chr10:5640489..5640513 (25 bp)
GGCTGGCCAGGTGGGAGGTGTCCAA
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--20--7471Chr10:5640472..5640496 (25 bp)
GTGTCCAACGCGAAGACGTGGCTGA
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--571--8911Chr10:5640450..5640474 (25 bp)
TGAGCGCCGCCATGGCGAACGTCGC
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--316--2551Chr10:5640433..5640457 (25 bp)
AACGTCGCGACCTGCGCCGACGGGT
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--421--911Chr10:5640354..5640378 (25 bp)
AGGCGGCGAACGTGAGCAAGTACAC
LOC_Os10g10630
OsAffx.18208.1.S1_x_at--807--3991Chr10:5640344..5640368 (25 bp)
CGTGAGCAAGTACACCAGCAACGCC
LOC_Os10g10630
Target Sequence 
GCGTTCCAGGACAGCCGCGTCAGGCTCGCGCGCGCGGCGGCGGACGTCGCCGCGGCGAGGCTACGGGACTTCTCGGCCAG
CCTCGACGAACTCGTCCACGGATCCGGGGACGTCGGGGCGGTGACGACGCCGCCGCGGGTGGCGGCGGCTGTGCGAGACT
GCGTGGGCACGGTATCGTCCGCCGCCGGGCTGGCGAGGCGGTCGTCCGCCGCGCTCGACCGCCTGGACGCCGGCGCCGCG
GCGGGGGGCGGAGGGAGCAGGCTGGCCAGGTGGGAGGTGTCCAACGCGAAGACGTGGCTGAGCGCCGCCATGGCGAACGT
CGCGACCTGCGCCGACGGGTTCGCCGACGCGGATTCGTGGTCGGCGGCGGGGATCGAGGAGGTGGTGGCCGGCGAGGCGG
CGAACGTGAGCAAGTACACCAGCAACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18208.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis