Browse Element(s) Details


OsAffx.18284.2.S1_at

Description tigr:9638.m03123
TID=OsAffx.18284.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=spore coat proein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3532011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18284.2.S1_at--856--1651Chr10:18554011..18554035 (25 bp)
AGCGCCATGGCAGCCAGAGTTCTTC
LOC_Os10g35320
OsAffx.18284.2.S1_at--460--4351Chr10:18554008..18554032 (25 bp)
GCCATGGCAGCCAGAGTTCTTCGGC
LOC_Os10g35320
OsAffx.18284.2.S1_at--738--851Chr10:18554005..18554029 (25 bp)
ATGGCAGCCAGAGTTCTTCGGCGAG
LOC_Os10g35320
OsAffx.18284.2.S1_at--994--3371Chr10:18554001..18554025 (25 bp)
CAGCCAGAGTTCTTCGGCGAGGGTA
LOC_Os10g35320
OsAffx.18284.2.S1_at--1007--1671Chr10:18554000..18554024 (25 bp)
AGCCAGAGTTCTTCGGCGAGGGTAT
LOC_Os10g35320
OsAffx.18284.2.S1_at--251--6071Chr10:18553995..18554019 (25 bp)
GAGTTCTTCGGCGAGGGTATCACCG
LOC_Os10g35320
OsAffx.18284.2.S1_at--331--1231Chr10:18553994..18554018 (25 bp)
AGTTCTTCGGCGAGGGTATCACCGT
LOC_Os10g35320
OsAffx.18284.2.S1_at--910--6731Chr10:18553993..18554017 (25 bp)
GTTCTTCGGCGAGGGTATCACCGTC
LOC_Os10g35320
OsAffx.18284.2.S1_at--281--9571Chr10:18553991..18554015 (25 bp)
TCTTCGGCGAGGGTATCACCGTCAA
LOC_Os10g35320
OsAffx.18284.2.S1_at--291--2471Chr10:18553884..18553908 (25 bp)
AACGTCTCCCTCTCTAACAGCTTCC
LOC_Os10g35320
OsAffx.18284.2.S1_at--162--4651Chr10:18553836..18553860 (25 bp)
GCGTCGTACCTCTCGGCCCTGGACA
LOC_Os10g35320
Target Sequence 
AGCGCCATGGCAGCCAGAGTTCTTCGGCGAGGGTATCACCGTCAACGGCAAGGCCTGGCCGTTCCTCATCGTCTACCGCC
GCCGCTACCGCCTCCGCATCCTAAACGCCATCAACGCCCGCTACTTCAACGTCTCCCTCTCTAACAGCTTCCCCATCCAC
GTCTTCGGCTCCGACGCGTCGTACCTCTCGGCCCTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18284.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis