Browse Element(s) Details


OsAffx.18422.1.S1_at

Description tigr:9638.m02350
TID=OsAffx.18422.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2739011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18422.1.S1_at--342--1091Chr10:14116623..14116647 (25 bp)
AGGGCCTAGCAACTGGGCGCCGAGG
LOC_Os10g27390
OsAffx.18422.1.S1_at--864--2131Chr10:14116683..14116707 (25 bp)
ACAGTATGGTTACTTCGCGTCCATG
LOC_Os10g27390
OsAffx.18422.1.S1_at--350--10411Chr10:14116692..14116716 (25 bp)
TTACTTCGCGTCCATGGTTCCACGG
LOC_Os10g27390
OsAffx.18422.1.S1_at--501--2951Chr10:14116744..14116768 (25 bp)
AAGGCGCCGATGGACTGTGCCGAGC
LOC_Os10g27390
OsAffx.18422.1.S1_at--399--8331Chr10:14116786..14116810 (25 bp)
GGCTGTCACGCGGAGTCAACGAGCA
LOC_Os10g27390
OsAffx.18422.1.S1_at--541--6091Chr10:14116834..14116858 (25 bp)
GAGTACTACGGATGCAGCGTCGCCG
LOC_Os10g27390
OsAffx.18422.1.S1_at--270--2731Chr10:14116874..14116898 (25 bp)
AAGAATTGCTGAAGTTTCTGCAGGC
LOC_Os10g27390
OsAffx.18422.1.S1_at--851--3451Chr10:14117015..14117039 (25 bp)
CAGGTCATGACGGTCGCCGTGGCTC
LOC_Os10g27390
OsAffx.18422.1.S1_at--139--691Chr10:14117021..14117045 (25 bp)
ATGACGGTCGCCGTGGCTCGCTGCA
LOC_Os10g27390
OsAffx.18422.1.S1_at--328--5791Chr10:14117104..14117128 (25 bp)
GACGACGTCACATCTGCCGCCAGTG
LOC_Os10g27390
OsAffx.18422.1.S1_at--454--4511Chr10:14117119..14117143 (25 bp)
GCCGCCAGTGCAGGTGACGACGTCA
LOC_Os10g27390
Target Sequence 
AGGGCCTAGCAACTGGGCGCCGAGGCCTTGCAACTGCCGGGAGTGCGCGCCGGCGGCGGGACAGTATGGTTACTTCGCGT
CCATGGTTCCACGGCCGTCGCTGGACCGGAAGGGCAAGGGCAAGGCGCCGATGGACTGTGCCGAGCAGGCCGGCGGCGGC
GGCGGCTGTCACGCGGAGTCAACGAGCACTCCGGCGCCGCCGAAGGGCGCCGAGTACTACGGATGCAGCGTCGCCGTCGA
GGATGATGACGAAGAATTGCTGAAGTTTCTGCAGGCGATGGTGAGGGGCGAGGAGGTGGAGGGTGATGGCGACCACGCCA
TGGCCGACGAGCGCGGCCCGCAGCAGGGCTCCTCCCCGGTGGCGGCGGCGGCGGCCTCCGGCTCCGCGCCTGCAGGTCAT
GACGGTCGCCGTGGCTCGCTGCAGGGTGGCCACCATGGATCCTCCTCCCCCACCTCATTGGCGGCCGCCGCCGCCACCGG
CGACGACGTCACATCTGCCGCCAGTGCAGGTGACGACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis