Browse Element(s) Details


OsAffx.18450.1.S1_at

Description tigr:9638.m02534
TID=OsAffx.18450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g296306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18450.1.S1_at--406--4491Chr10:15077962..15077986 (25 bp)
GCCGGCACACGGATCAGGACGTCGA
LOC_Os10g29630
OsAffx.18450.1.S1_at--1045--4251Chr10:15077963..15077987 (25 bp)
CCGGCACACGGATCAGGACGTCGAG
LOC_Os10g29630
OsAffx.18450.1.S1_at--168--5131Chr10:15077966..15077989 (24 bp)
GCACACGGATCAGGACGTCGAGGTT
LOC_Os10g29630
OsAffx.18450.1.S1_at--75--3311NONE
CACACGGATCAGGACGTCGAGGTTA
NONE
OsAffx.18450.1.S1_at--805--2171Chr10:15077968..15077989 (22 bp)
ACACGGATCAGGACGTCGAGGTTAC
LOC_Os10g29630
OsAffx.18450.1.S1_at--87--3351Chr10:15077969..15077989 (21 bp)
CACGGATCAGGACGTCGAGGTTACT
LOC_Os10g29630
OsAffx.18450.1.S1_at--482--1911Chr10:15077970..15077989 (20 bp)
ACGGATCAGGACGTCGAGGTTACTG
LOC_Os10g29630
OsAffx.18450.1.S1_at--1071--6431NONE
GATCAGGACGTCGAGGTTACTGGAA
NONE
OsAffx.18450.1.S1_at--753--9631NONE
TCAGGACGTCGAGGTTACTGGAACA
NONE
OsAffx.18450.1.S1_at--1064--951NONE
AGGACGTCGAGGTTACTGGAACAGA
NONE
OsAffx.18450.1.S1_at--442--8111NONE
GGACGTCGAGGTTACTGGAACAGAA
NONE
Target Sequence 
GCCGGCACACGGATCAGGACGTCGAGGTTACTGGAACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis