Browse Element(s) Details


OsAffx.18559.1.S1_at

Description tigr:9638.m03371
TID=OsAffx.18559.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g376507/11impaired sucrose induction 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18559.1.S1_at--186--3372Chr12:1446172..1446191 (20 bp)
CAGGCGGATTAGTGGCAACGGCGGT
NONE
OsAffx.18559.1.S1_at--942--7491Chr10:19818381..19818400 (20 bp)
GTGGTGCCACCACCGCGATGCCGGG
NONE
OsAffx.18559.1.S1_at--1005--4991Chr10:19818469..19818493 (25 bp)
GCATGTACCGCGACCTGGCGCAGTC
LOC_Os10g37650
OsAffx.18559.1.S1_at--499--7291Chr10:19818747..19818771 (25 bp)
GTGCCGGTGCTGTTCGAGCACAGCC
LOC_Os10g37650
OsAffx.18559.1.S1_at--544--9371Chr10:19818760..19818784 (25 bp)
TCGAGCACAGCCTCCGGAGGGCGCA
LOC_Os10g37650
OsAffx.18559.1.S1_at--356--7771Chr10:19818884..19818908 (25 bp)
GGTGCTCGAGGGTTGCTGCCTCCTC
LOC_Os10g37650
OsAffx.18559.1.S1_at--1085--5791NONE
GACGCCGTCAAGGATTTCAAGGAAC
NONE
OsAffx.18559.1.S1_at--1010--4131NONE
CGCCGTCAAGGATTTCAAGGAACAT
NONE
OsAffx.18559.1.S1_at--27--3211Chr10:19820756..19820780 (25 bp)
CAAGGAACATGAAGGACTAGATAAA
LOC_Os10g37650
OsAffx.18559.1.S1_at--259--6471Chr10:19820775..19820799 (25 bp)
GATAAAATTGGTGATCTTGTTAAGG
LOC_Os10g37650
OsAffx.18559.1.S1_at--1151--6411Chr10:19820787..19820811 (25 bp)
GATCTTGTTAAGGACACACAAAGAG
LOC_Os10g37650
Target Sequence 
CAGGCGGATTAGTGGCAACGGCGGTGGTGCCACCACCGCGATGCCGGGAGCGGCGGCGGGGGATGAGGCGGCGGCGGCGG
CGGGAGGGAGGCGGCCGACGGCGTCGGAGCGGCGGCGCATGTACCGCGACCTGGCGCAGTCGCTGCGGTGCGGCCTCCGC
GACGCGTCCGCGGGGTTCTCCTTCCTCCGCCTCCGCGGCCTCCGCGCGCTCCTCCGCGCCCTCCGCTCCGCCGCCGCCGC
CGACGCCGACGCCCGCCTCTTCCGCCACTCCCAGGCCCTCCGCGACCTCCAAGTGGTGCCGGTGCTGTTCGAGCACAGCC
TCCGGAGGGCGCAGGGCGACGCGGTGGTGACGGTGGGGCAGGTGCTCGGCATCTCGCCCGCCGTCAAGCTCAGCAACCCC
GCCACCGACTCCGAGGTGGCGCTCGCGCTCCGGGTGCTCGAGGGTTGCTGCCTCCTCTGCCGGGACTGCGCCGCCGCCGC
GCATCGCTACGACGCCGTCAAGGATTTCAAGGAACATGAAGGACTAGATAAAATTGGTGATCTTGTTAAGGACACACAAA
GAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis