Browse Element(s) Details


OsAffx.18648.1.S1_at

Description tigr:9639.m00222
TID=OsAffx.18648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0315011/11hypothetical protein
LOC_Os12g029001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03100Os.31312.5.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.2.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03110Os.47623.1.A1_at11/1111+1118747..1122351GRAS family transcription factor containing protein, expressed
LOC_Os11g03120OsAffx.18646.1.S1_at11/1111+1125514..1126413hypothetical protein
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18648.1.S1_at--536--5651Chr11:1132974..1132998 (25 bp)
GACAGACCACGGTGCGACGATCCCG
LOC_Os11g03150
OsAffx.18648.1.S1_at--1093--1871Chr11:1132990..1133014 (25 bp)
ACGATCCCGACGTCAACGAGATGGA
LOC_Os11g03150
OsAffx.18648.1.S1_at--224--2651Chr11:1133055..1133079 (25 bp)
AACCAAGTCATCCTCCGGGCGCAGG
LOC_Os11g03150
OsAffx.18648.1.S1_at--871--1532Chr12:1059691..1059715 (25 bp)
AGCATCGCTAGCTCAGCTCGTGTCC
NONE
OsAffx.18648.1.S1_at--441--4811Chr11:1133592..1133616 (25 bp)
GCTCGTGTCCACCAATTCACAAAAT
LOC_Os11g03150
OsAffx.18648.1.S1_at--222--3052Chr12:1059727..1059981 (25 bp)
AATCGATTCCAATACCCAACAAGGC
NONE
OsAffx.18648.1.S1_at--693--6351Chr11:1133792..1133816 (25 bp)
GATGCCGATGGAACGGGTGCACCAC
LOC_Os11g03150
OsAffx.18648.1.S1_at--579--7711Chr11:1133806..1133830 (25 bp)
GGGTGCACCACCTGCTGTCGATGGT
LOC_Os11g03150
OsAffx.18648.1.S1_at--367--10671Chr11:1133845..1133869 (25 bp)
TTCCTCTTCCGGTGATCCGCGATGA
LOC_Os11g03150
OsAffx.18648.1.S1_at--195--6291Chr11:1133865..1133889 (25 bp)
GATGATTCCCCGGAGCTGAAGGAGA
LOC_Os11g03150
OsAffx.18648.1.S1_at--1152--6032Chr12:1067772..1067807 (25 bp)
GAGATCGACCAACGTCGTGCAGGCT
LOC_Os12g02900
Target Sequence 
GACAGACCACGGTGCGACGATCCCGACGTCAACGAGATGGAGGATCTCCTCGCCCACACCGTGCTGCTCCTCAACTCCAA
CAACCAAGTCATCCTCCGGGCGCAGGCCAGGGCCCGCGAGGAGCTCCGGACCAAGGGCTACGTCGAGCGCTGGACCAGCA
TCGCTAGCTCAGCTCGTGTCCACCAATTCACAAAATCGATTCCAATACCCAACAAGGCGACGCCGTCGGAGGAGGAGGAA
TTAAAGGGAAGAGAAGAAGATCGATGTGTGGCGATGACAAATGAGCTGAAGAGGTGCTCCAAGGAGGCGACGCCATCGGA
GGAGAAGGCCGCCAAGAAGATGAAGAAGGAGGAGGCTGTGAAGAAGAAGAGGATGCCGATGGAACGGGTGCACCACCTGC
TGTCGATGGTGCCGAGGGCGCCGGTTCCTCTTCCGGTGATCCGCGATGATTCCCCGGAGCTGAAGGAGATCGACCAACGT
CGTGCAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis