Browse Element(s) Details


OsAffx.18683.1.S1_at

Description tigr:9639.m00443
TID=OsAffx.18683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0527011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05220Os.14919.1.S1_at5/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220OsAffx.29313.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220Os.56216.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05230OsAffx.30825.1.S1_at11/1111+2314669..2315574Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g05240OsAffx.30826.1.S1_at11/1111+2317594..2319117PAN domain containing protein
LOC_Os11g05250NANA11+2320717..2323376hypothetical protein
LOC_Os11g05260Os.9756.1.S1_a_at11/1111+2325827..2329111phosphoglycerate mutase family protein, expressed
LOC_Os11g05270OsAffx.18683.1.S1_at11/1111+2331554..2332567hypothetical protein
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18683.1.S1_at--1034--8671Chr11:2332511..2332535 (25 bp)
TGTGATTCATTCATCGGGCACGGAA
LOC_Os11g05270
OsAffx.18683.1.S1_at--968--491Chr11:2332499..2332523 (25 bp)
ATCGGGCACGGAAAACCAGGCACTT
LOC_Os11g05270
OsAffx.18683.1.S1_at--513--2431Chr11:2332488..2332512 (25 bp)
AAAACCAGGCACTTGATCCCAGAGG
LOC_Os11g05270
OsAffx.18683.1.S1_at--57--8251Chr11:2332481..2332505 (25 bp)
GGCACTTGATCCCAGAGGCATTAGA
LOC_Os11g05270
OsAffx.18683.1.S1_at--256--31Chr11:2332050..2332478 (25 bp)
ATTGGAGCAAGGACAACTTGACAAT
LOC_Os11g05270
OsAffx.18683.1.S1_at--430--3991Chr11:2331647..2331668 (22 bp)
CGTGGAAAAGATAACGCTGCAGTTT
LOC_Os11g05270
OsAffx.18683.1.S1_at--378--6471Chr11:2331638..2331662 (25 bp)
GATAACGCTGCAGTTTTTAAAGATA
LOC_Os11g05270
OsAffx.18683.1.S1_at--735--6451Chr11:2331617..2331641 (25 bp)
GATACAGCAAGCACAAGTTGACGTA
LOC_Os11g05270
OsAffx.18683.1.S1_at--1138--5111Chr11:2331607..2331631 (25 bp)
GCACAAGTTGACGTAGGAGGCATTT
LOC_Os11g05270
OsAffx.18683.1.S1_at--787--5751Chr11:2331598..2331622 (25 bp)
GACGTAGGAGGCATTTATGTTTCTA
LOC_Os11g05270
OsAffx.18683.1.S1_at--42--10431Chr11:2331584..2331608 (25 bp)
TTATGTTTCTAATCTACTGAACAAG
LOC_Os11g05270
Target Sequence 
TGTGATTCATTCATCGGGCACGGAAAACCAGGCACTTGATCCCAGAGGCATTAGAAAATTGGAGCAAGGACAACTTGACA
ATGCAAATATTATAAGTACAGAAAACACAAAAGAGGCATACGTGGAAAAGATAACGCTGCAGTTTTTAAAGATACAGCAA
GCACAAGTTGACGTAGGAGGCATTTATGTTTCTAATCTACTGAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis