Browse Element(s) Details


OsAffx.1874.1.S1_at

Description gb:AK106257.1
DB_XREF= gi:32991466
TID=OsAffx.1874.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F01, full insert sequence.
FL= gb:AK106257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g598401/11Cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59850Os.6002.1.S1_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59850Os.6002.3.S1_x_at11/111+34939499..34945854GTPase activating protein, putative, expressed
LOC_Os01g59860Os.13245.1.S1_x_at11/111+34947082..34950777expressed protein
LOC_Os01g59870Os.13246.1.S1_at11/111+34953033..34955450Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g59880Os.53066.1.S1_at11/111+34959817..34962018expressed protein
LOC_Os01g59880Os.53066.1.S1_x_at11/111+34959817..34962018expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1874.1.S1_at--834--831Chr01:33866134..33866158 (25 bp)
ATGGATGGATTCAGTCAGCCTCACT
NONE
OsAffx.1874.1.S1_at--184--2332Chr01:33866097..33866121 (25 bp)
AAAGTGACGCTTTGCGTCTTCGCTT
NONE
OsAffx.1874.1.S1_at--64--9551Chr01:33866081..33866105 (25 bp)
TCTTCGCTTCCGAGGGTTAGGGTAT
NONE
OsAffx.1874.1.S1_at--529--6871Chr01:33866060..33866084 (25 bp)
GTATAGGCCGTTTCGAGCAAGCTTT
NONE
OsAffx.1874.1.S1_at--498--9852Chr10:18746584..18746608 (25 bp)
TACAACTTTCGCTTTAGCTTCGCGA
NONE
OsAffx.1874.1.S1_at--202--5232Chr06:14188958..14188982 (25 bp)
GAATTTGAAGTATTCGTCGCCCTAC
NONE
OsAffx.1874.1.S1_at--1012--10172Chr11:11873085..11873109 (25 bp)
TATAAAACAGCTTGCCCTCCTGAAG
NONE
OsAffx.1874.1.S1_at--228--2751Chr01:33865865..33865889 (25 bp)
AAGAAGCCTGCCTATTGACTAATAT
NONE
OsAffx.1874.1.S1_at--797--5411Chr01:33865815..33865839 (25 bp)
GAAGCCCAATCTACTGTCGATTCAA
NONE
OsAffx.1874.1.S1_at--743--2851Chr01:33865699..33865723 (25 bp)
AAGTCCGTGACGAAGATCTTTCTTT
NONE
OsAffx.1874.1.S1_at--380--7672Chr02:32158164..32158188 (25 bp)
GGGATAGGATCCATCTGCTCTCTCT
NONE
Target Sequence 
ATGGATGGATTCAGTCAGCCTCACTCCTTCCTTTTGAAAAGTGACGCTTTGCGTCTTCGCTTCCGAGGGTTAGGGTATAG
GCCGTTTCGAGCAAGCTTTCGCTTTTTCTCCCGGCTTTCTACAACTTTCGCTTTAGCTTCGCGACCCCTTTCCGGAATTT
GAAGTATTCGTCGCCCTACCCTAAGAAAGAAGTCACTATAAAACAGCTTGCCCTCCTGAAGTACCAAAGGTGCGCGGAGC
CCGGTGAAAATGAATATGTTTGCTACTGAAAGAAGCCTGCCTATTGACTAATATTCGTCTTTAGAATGAAAGTAGCTATG
AAGCCCAATCTACTGTCGATTCAAAAGAGGGCATAGTCGTATGGGTGGGGTGTTTGTGGGGAGCTGCCTTGGATATGAGG
AATTCCTCAAATCTAAAAAAAATAGAACAAAGGCAAAGTCCGTGACGAAGATCTTTCTTTTCTATCAATAGATAGAAATG
AGTGTTCGTTATAGGGGATAGGATCCATCTGCTCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis