Browse Element(s) Details


OsAffx.18895.1.S1_at

Description tigr:9639.m01588
TID=OsAffx.18895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1732010/11hypothetical protein
LOC_Os11g171301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17300Os.52732.1.S1_x_at11/1111+9612797..9617365transposon protein, putative, unclassified, expressed
LOC_Os11g17310Os.46012.2.S1_x_at7/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.46012.3.S1_x_at6/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.27088.1.A1_x_at5/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17310Os.54691.1.S1_x_at1/1111+9626903..9632566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g17320OsAffx.18895.1.S1_at10/1111+9636728..9638137hypothetical protein
LOC_Os11g17330OsAffx.31015.1.S1_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17330OsAffx.31015.2.S1_s_at11/1111+9641016..9645366NB-ARC domain containing protein
LOC_Os11g17340NANA11+9650873..9651283hypothetical protein
LOC_Os11g17350NANA11+9652410..9653420expressed protein
LOC_Os11g17360OsAffx.7131.1.S1_at10/1111+9654069..9655199hypothetical protein
LOC_Os11g17370OsAffx.22848.4.S1_x_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.4.S1_at2/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17370OsAffx.22848.3.S1_x_at1/1111+9657427..9659542retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18895.1.S1_at--165--1352Chr11:9492725..9492749 (25 bp)
AGAGTTGCAAGCTGTTGGTATTTCT
LOC_Os11g17130
OsAffx.18895.1.S1_at--1047--10191Chr11:9638048..9638072 (25 bp)
TATTTCTTGTGGTCGCCGGAAAATC
LOC_Os11g17320
OsAffx.18895.1.S1_at--1112--1911Chr11:9638014..9638038 (25 bp)
ACGGATACCGCAGTAGCATTTCACC
LOC_Os11g17320
OsAffx.18895.1.S1_at--286--2671NONE
AAGCGGTGGTGTAAAGTTCACGATC
NONE
OsAffx.18895.1.S1_at--418--7831Chr11:9637162..9637186 (25 bp)
GGTACTTAACGACCATCACCAACAC
LOC_Os11g17320
OsAffx.18895.1.S1_at--427--2171Chr11:9637142..9637166 (25 bp)
AACACCACCAAGCTAAACCTTTGCT
LOC_Os11g17320
OsAffx.18895.1.S1_at--1122--2351Chr11:9637128..9637152 (25 bp)
AAACCTTTGCTCATCCTCGAGTAAA
LOC_Os11g17320
OsAffx.18895.1.S1_at--274--7011Chr11:9636872..9636896 (25 bp)
GTCGGAGGAGGTTAACTTTTCTCAG
LOC_Os11g17320
OsAffx.18895.1.S1_at--70--7631Chr11:9636821..9636845 (25 bp)
GGGAAATCTTAAGTACTCTTCTCAA
LOC_Os11g17320
OsAffx.18895.1.S1_at--529--10431Chr11:9636791..9636815 (25 bp)
TTATGCCCCAAACTTTCAGGCCATG
LOC_Os11g17320
OsAffx.18895.1.S1_at--1082--651Chr11:9636769..9636793 (25 bp)
ATGCAACCACCTATTCATTTCCATT
LOC_Os11g17320
Target Sequence 
AGAGTTGCAAGCTGTTGGTATTTCTTGTGGTCGCCGGAAAATCCGCAAGCGCACGGATACCGCAGTAGCATTTCACCCAA
GAGAATTCAAAGGGTATCGTATTTATATTTCCGTAGGGAAGCGGTGGTGTAAAGTTCACGATCGAAATTGGTACTTAACG
ACCATCACCAACACCACCAAGCTAAACCTTTGCTCATCCTCGAGTAAAGTAATGTCGGAGGAGGTTAACTTTTCTCAGGA
GAATGATATTTGCGCTTACATTTGGGGAAATCTTAAGTACTCTTCTCAAAAGTTTTATGCCCCAAACTTTCAGGCCATGC
AACCACCTATTCATTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis