Browse Element(s) Details


OsAffx.18998.1.S1_at

Description tigr:9639.m02201
TID=OsAffx.18998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24810Os.14919.1.S1_at3/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810OsAffx.29313.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24810Os.56216.1.S1_at1/1111+13638084..13643523Transposable element protein, putative, MuDR
LOC_Os11g24820NANA11+13653324..13654256expressed protein
LOC_Os11g24830NANA11+13655377..13659705retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24840OsAffx.18998.1.S1_at11/1111+13663959..13665285hypothetical protein
LOC_Os11g24850OsAffx.31121.1.S1_at10/1111+13668827..13669663ankyrin repeat family protein, putative
LOC_Os11g24860NANA11+13671111..13674416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24870NANA11+13675842..13679496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.47463.1.S1_x_at6/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24880Os.14491.2.S1_x_at4/1111+13679681..13680675transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g24890OsAffx.7193.1.S1_at9/1111+13683837..13685772expressed protein
LOC_Os11g24900OsAffx.18999.1.S1_at11/1111+13686901..13687202hypothetical protein
LOC_Os11g24910OsAffx.31122.1.S1_at1/1111+13688834..13689448hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18998.1.S1_at--457--3152Chr11:13664505..13664529 (25 bp)
AATTGTTTCTACTCTTGTGGCGACA
LOC_Os11g24840
OsAffx.18998.1.S1_at--160--811Chr11:13664416..13664440 (25 bp)
ATGGTGACCGTTTGTACCACGCCTT
LOC_Os11g24840
OsAffx.18998.1.S1_at--1099--7491Chr11:13664390..13664414 (25 bp)
GTGGTGCTAGACACTGTTGCAGTCA
LOC_Os11g24840
OsAffx.18998.1.S1_at--1060--5011Chr11:13664372..13664396 (25 bp)
GCAGTCACCACTTCTGTAGTTGCAA
LOC_Os11g24840
OsAffx.18998.1.S1_at--421--5311Chr11:13664329..13664353 (25 bp)
GAAGGATTGCACAGTCGCATCGCTC
LOC_Os11g24840
OsAffx.18998.1.S1_at--907--4391Chr11:13664301..13664325 (25 bp)
GCCAAGCTTTATAATCGCAATGCAC
LOC_Os11g24840
OsAffx.18998.1.S1_at--594--9671Chr11:13664276..13664300 (25 bp)
TCACTTTGGCTCTCACTGATTTGTA
LOC_Os11g24840
OsAffx.18998.1.S1_at--305--731Chr11:13664252..13664276 (25 bp)
ATGTTGCTAGCCTTCTTCATAAGTA
LOC_Os11g24840
OsAffx.18998.1.S1_at--535--7911Chr11:13664194..13664218 (25 bp)
GGATTGCACCAACACGTGTTATGTA
LOC_Os11g24840
OsAffx.18998.1.S1_at--648--4931Chr11:13664080..13664104 (25 bp)
GCTTGGAACAAGAACGCCGCGCGAA
LOC_Os11g24840
OsAffx.18998.1.S1_at--629--3091Chr11:13664038..13664062 (25 bp)
AATATCCGCTAATCGTTGTTTACAT
LOC_Os11g24840
Target Sequence 
AATTGTTTCTACTCTTGTGGCGACAATCGCCTTCTCGGCTACATTCAACATGCCTGGATCATATGGATCAGATGGAAAGG
CAAATCTGAATGGTGACCGTTTGTACCACGCCTTCGTGGTGCTAGACACTGTTGCAGTCACCACTTCTGTAGTTGCAACA
ATACTTTTGTTGTATGGAAGGATTGCACAGTCGCATCGCTCATGGCCAAGCTTTATAATCGCAATGCACTCACTTTGGCT
CTCACTGATTTGTATGTTGCTAGCCTTCTTCATAAGTATAATTGCAGTGATGGACAAGAATAATTCTATAAGGATTGCAC
CAACACGTGTTATGTATCACGGATTGTACATCTTGATGATGATGCTAACAAAGGCTACAATGCCTGGATCAGTTAAAGGC
ATTCTAATGTTTCTGATAGGGGGACGCTTGGAACAAGAACGCCGCGCGAAGAGACGCATCAGGCGGCAATATCCGCTAAT
CGTTGTTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis