Browse Element(s) Details


OsAffx.19004.1.S1_at

Description tigr:9639.m02232
TID=OsAffx.19004.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2515011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25100Os.49351.1.S1_at10/1111+13802839..13803422Tropinone reductase homolog At1g07440, putative
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein
LOC_Os11g25150OsAffx.19004.1.S1_at11/1111+13827892..13828384hypothetical protein
LOC_Os11g25160OsAffx.31125.1.S1_at11/1111+13829257..13830225expressed protein
LOC_Os11g25170Os.20079.1.S1_s_at11/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25170Os.20079.1.S2_at10/1111+13830394..13835900Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os11g25180Os.47463.1.S1_x_at4/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25180Os.14491.2.S1_x_at3/1111+13841378..13848256transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19004.1.S1_at--357--5531Chr11:13828325..13828349 (25 bp)
GAAAAAACATTTGCTCATGCGACCA
LOC_Os11g25150
OsAffx.19004.1.S1_at--156--2392Chr08:1804435..1804796 (25 bp)
AAACATTTGCTCATGCGACCAAAAT
NONE
OsAffx.19004.1.S1_at--413--10691Chr11:13828315..13828339 (25 bp)
TTGCTCATGCGACCAAAATGGCTCT
LOC_Os11g25150
OsAffx.19004.1.S1_at--977--591Chr11:13828309..13828333 (25 bp)
ATGCGACCAAAATGGCTCTATCCAG
LOC_Os11g25150
OsAffx.19004.1.S1_at--198--5851Chr11:13828305..13828329 (25 bp)
GACCAAAATGGCTCTATCCAGACCG
LOC_Os11g25150
OsAffx.19004.1.S1_at--1154--2291Chr11:13828300..13828324 (25 bp)
AAATGGCTCTATCCAGACCGCCAAA
LOC_Os11g25150
OsAffx.19004.1.S1_at--180--3271Chr11:13828279..13828303 (25 bp)
CAAACACTCCGCGTGCAACTAAAAG
LOC_Os11g25150
OsAffx.19004.1.S1_at--766--1991Chr11:13828274..13828298 (25 bp)
ACTCCGCGTGCAACTAAAAGACCTA
LOC_Os11g25150
OsAffx.19004.1.S1_at--302--4651Chr11:13828269..13828293 (25 bp)
GCGTGCAACTAAAAGACCTACAAAG
LOC_Os11g25150
OsAffx.19004.1.S1_at--605--5831Chr11:13828256..13828279 (24 bp)
GACCTACAAAGATATGTTGTCTTGT
LOC_Os11g25150
OsAffx.19004.1.S1_at--831--10791Chr11:13828071..13828263 (25 bp)
TTGTCTTGTACAACTTCGTGGTTTT
LOC_Os11g25150
Target Sequence 
GAAAAAACATTTGCTCATGCGACCAAAATGGCTCTATCCAGACCGCCAAACACTCCGCGTGCAACTAAAAGACCTACAAA
GATATGTTGTCTTGTACAACTTCGTGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis