Browse Element(s) Details


OsAffx.19035.2.S1_at

Description tigr:9632.m01449
TID=OsAffx.19035.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1619011/11hypothetical protein
LOC_Os07g183901/11retrotransposon protein, putative, unclassified
LOC_Os01g325101/11transposon protein, putative, unclassified
LOC_Os06g312401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16150NANA4+8748755..8754057retrotransposon protein, putative, unclassified
LOC_Os04g16160OsAffx.13835.1.S1_at11/114+8758756..8760142hypothetical protein
LOC_Os04g16170NANA4+8762507..8766627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16180NANA4+8767125..8768219retrotransposon protein, putative, unclassified
LOC_Os04g16190OsAffx.19035.2.S1_at11/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_at2/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.13772.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16190OsAffx.19035.1.S1_x_at1/114+8769564..8772400hypothetical protein
LOC_Os04g16200OsAffx.22699.1.S1_x_at3/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200Os.52731.1.S1_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16200OsAffx.18275.1.S1_x_at1/114+8773104..8780015retrotransposon protein, putative, unclassified
LOC_Os04g16210Os.38764.1.S1_x_at6/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_x_at4/114+8780432..8782610hypothetical protein
LOC_Os04g16210Os.31845.1.S1_at3/114+8780432..8782610hypothetical protein
LOC_Os04g16220NANA4+8785341..8786489hypothetical protein
LOC_Os04g16230OsAffx.27824.1.S1_at1/114+8794887..8796071hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19035.2.S1_at--369--4131Chr04:8770089..8770113 (25 bp)
CGCAGGCAGCCTGAGACACCGGTAA
LOC_Os04g16190
OsAffx.19035.2.S1_at--594--8891Chr04:8770078..8770102 (25 bp)
TGAGACACCGGTAATCGTTCCGGCA
LOC_Os04g16190
OsAffx.19035.2.S1_at--86--8931Chr04:8770045..8770069 (25 bp)
TGAGCCATACGTGCCGCAGGATGAC
LOC_Os04g16190
OsAffx.19035.2.S1_at--535--7291Chr04:8770035..8770059 (25 bp)
GTGCCGCAGGATGACGTCGATCAAA
LOC_Os04g16190
OsAffx.19035.2.S1_at--998--4111Chr04:8770031..8770055 (25 bp)
CGCAGGATGACGTCGATCAAAGCCT
LOC_Os04g16190
OsAffx.19035.2.S1_at--531--7253Chr06:18173373..18173393 (21 bp)
GTCCGCGGAGACGAACATGGCAATA
LOC_Os06g31240
OsAffx.19035.2.S1_at--466--4071Chr04:8769996..8770019 (24 bp)
CGAACATGGCAATAACGTCCTTAGA
LOC_Os04g16190
OsAffx.19035.2.S1_at--362--8451Chr04:8769799..8769823 (25 bp)
TGGCCAAACTCGAGAGGACCACGGT
LOC_Os04g16190
OsAffx.19035.2.S1_at--922--7891Chr04:8769724..8769748 (25 bp)
GGTTCCACGCGTACCTCAGGAGCTA
LOC_Os04g16190
OsAffx.19035.2.S1_at--810--3352Chr07:10893615..10893635 (21 bp)
CACGCGTACCTCAGGAGCTATTGTA
LOC_Os07g18390
OsAffx.19035.2.S1_at--1080--951Chr04:8769707..8769731 (25 bp)
AGGAGCTATTGTACGGCAATGGCTG
LOC_Os04g16190
Target Sequence 
CGCAGGCAGCCTGAGACACCGGTAATCGTTCCGGCACTTGCGCTTGAGCCATACGTGCCGCAGGATGACGTCGATCAAAG
CCTGTCCGCGGAGACGAACATGGCAATAACGTCCTTAGACCTCGAGAGCGCGTTGGCCGACCGAGATCGTCGAATCCAGT
ACTGGAGGACGAAGTTCGAGGTGGCCAAACTCGAGAGGACCACGGTGGAAGTGAAGAAAGACCAAGCCGTGGAAGCCCTC
CGAGGTCGCGAGGTGTGGTTCCACGCGTACCTCAGGAGCTATTGTACGGCAATGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19035.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis