Browse Element(s) Details


OsAffx.19092.1.S1_at

Description tigr:9639.m02785
TID=OsAffx.19092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3077011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30750OsAffx.31232.1.S1_at11/1111+17399895..17400239hypothetical protein
LOC_Os11g30750OsAffx.29246.1.S1_x_at1/1111+17399895..17400239hypothetical protein
LOC_Os11g30760Os.52147.1.S1_at11/1111+17408324..17409291expressed protein
LOC_Os11g30770OsAffx.19092.1.S1_at11/1111+17424020..17424454hypothetical protein
LOC_Os11g30780NANA11+17430176..17430932hypothetical protein
LOC_Os11g30790Os.52356.1.S1_at2/1111+17431614..17437815expressed protein
LOC_Os11g30810Os.5230.1.S1_at11/1111+17440824..17442659Sulfotransferase domain containing protein, expressed
LOC_Os11g30820Os.15237.1.S1_at11/1111+17443380..17445669expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19092.1.S1_at--607--2731Chr11:17424039..17424063 (25 bp)
AAGAAGACGACGATCCTTTCGGCGT
LOC_Os11g30770
OsAffx.19092.1.S1_at--23--2751Chr11:17424042..17424066 (25 bp)
AAGACGACGATCCTTTCGGCGTCAA
LOC_Os11g30770
OsAffx.19092.1.S1_at--427--571Chr11:17424051..17424075 (25 bp)
ATCCTTTCGGCGTCAACAGCATCAA
LOC_Os11g30770
OsAffx.19092.1.S1_at--764--6731Chr11:17424094..17424118 (25 bp)
GTTCATCAACCGGTACGTGCTCCTG
LOC_Os11g30770
OsAffx.19092.1.S1_at--710--371Chr11:17424098..17424122 (25 bp)
ATCAACCGGTACGTGCTCCTGCAGA
LOC_Os11g30770
OsAffx.19092.1.S1_at--525--9511Chr11:17424187..17424211 (25 bp)
TCTCGGTGGCTTTGTCACCCTGCTA
LOC_Os11g30770
OsAffx.19092.1.S1_at--25--4891Chr11:17424195..17424219 (25 bp)
GCTTTGTCACCCTGCTACAGGAGAA
LOC_Os11g30770
OsAffx.19092.1.S1_at--13--1811Chr11:17424203..17424227 (25 bp)
ACCCTGCTACAGGAGAAGGACTTCT
LOC_Os11g30770
OsAffx.19092.1.S1_at--184--8051Chr11:17424214..17424238 (25 bp)
GGAGAAGGACTTCTGGTACCTCACC
LOC_Os11g30770
OsAffx.19092.1.S1_at--472--951Chr11:17424219..17424243 (25 bp)
AGGACTTCTGGTACCTCACCGTGAT
LOC_Os11g30770
OsAffx.19092.1.S1_at--555--8591Chr11:17424227..17424251 (25 bp)
TGGTACCTCACCGTGATCAGTCTCA
LOC_Os11g30770
Target Sequence 
AAGAAGACGACGATCCTTTCGGCGTCAACAGCATCAACGAGCGGCCGGAGGTGAGGTTCATCAACCGGTACGTGCTCCTG
CAGACGTGCGTGCTGATGGCCGTCAGGGGCCTCGCGTTCCTGGCGCTCACCTGGTCCACCGTCGTCCTTCTCGGTGGCTT
TGTCACCCTGCTACAGGAGAAGGACTTCTGGTACCTCACCGTGATCAGTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis