Browse Element(s) Details


OsAffx.19140.1.S1_x_at

Description tigr:9639.m03023
TID=OsAffx.19140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3320011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33134Os.54924.1.S1_at10/1111+19113504..19114166expressed protein
LOC_Os11g33150Os.46808.2.S1_x_at4/1111+19116876..19117982hypothetical protein
LOC_Os11g33160NANA11+19126557..19127048hypothetical protein
LOC_Os11g33170OsAffx.19139.1.S1_at11/1111+19127282..19127959hypothetical protein
LOC_Os11g33180NANA11+19128158..19130025F-box domain containing protein
LOC_Os11g33190Os.56360.1.S1_at9/1111+19133801..19136541F-box domain containing protein, expressed
LOC_Os11g33200OsAffx.19140.1.S1_x_at11/1111+19137846..19138231hypothetical protein
LOC_Os11g33200OsAffx.19140.1.S1_at10/1111+19137846..19138231hypothetical protein
LOC_Os11g33210OsAffx.19141.1.S1_at11/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33210OsAffx.4559.1.S1_at1/1111+19139302..19141104F-box domain containing protein
LOC_Os11g33220OsAffx.7284.1.S1_at10/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.53147.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33220Os.56360.1.S1_at1/1111+19142981..19144735F-box domain containing protein
LOC_Os11g33230NANA11+19146055..19146838hypothetical protein
LOC_Os11g33240Os.14102.1.S1_at10/1111+19147806..19154339Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os11g33250Os.53147.1.S1_at11/1111+19155308..19157263expressed protein
LOC_Os11g33260NANA11+19158943..19161283transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19140.1.S1_x_at--909--7991Chr11:19137893..19137917 (25 bp)
GGAGGAAGCTGACATCACCGCCACC
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--959--6171Chr11:19137954..19137978 (25 bp)
GAGGAGATCGTGAAGCTGTTAGTGA
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--685--3871Chr11:19137969..19138193 (25 bp)
CTGTTAGTGAGGTGTTTCTACAGCT
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--306--8771Chr11:19137970..19138194 (25 bp)
TGTTAGTGAGGTGTTTCTACAGCTA
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--369--6791Chr11:19137971..19138195 (25 bp)
GTTAGTGAGGTGTTTCTACAGCTAT
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--48--10451Chr11:19137972..19138196 (25 bp)
TTAGTGAGGTGTTTCTACAGCTATG
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--272--10071Chr11:19137973..19138197 (25 bp)
TAGTGAGGTGTTTCTACAGCTATGT
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--572--1111Chr11:19138178..19138198 (21 bp)
AGTGAGGTGTTTCTACAGCTATGTT
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--571--7391Chr11:19138178..19138199 (22 bp)
GTGAGGTGTTTCTACAGCTATGTTG
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--574--8891Chr11:19138178..19138200 (23 bp)
TGAGGTGTTTCTACAGCTATGTTGG
LOC_Os11g33200
OsAffx.19140.1.S1_x_at--1078--6131Chr11:19138178..19138201 (24 bp)
GAGGTGTTTCTACAGCTATGTTGGC
LOC_Os11g33200
Target Sequence 
GGAGGAAGCTGACATCACCGCCACCGCCATTGCTGCTGGTGGAGGTGTGGGCGGAGTAGAGGAGGAGATCGTGAAGCTGT
TAGTGAGGTGTTTCTACAGCTATGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19140.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis