Browse Element(s) Details


OsAffx.19155.1.S1_at

Description tigr:9639.m03108
TID=OsAffx.19155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified
LOC_Os11g34440OsAffx.31296.1.S1_at11/1111+19673520..19675027phospholipase A2, putative, expressed
LOC_Os11g34450Os.9221.1.S1_at8/1111+19677133..1968031114-3-3, putative, expressed
LOC_Os11g34460Os.52157.1.S1_x_at11/1111+19681205..19686055Adagio 3, putative, expressed
LOC_Os11g34470OsAffx.19155.1.S1_at11/1111+19690561..19693525hypothetical protein
LOC_Os11g34480NANA11+19701316..19701840transposon protein, putative, unclassified
LOC_Os11g34490OsAffx.22848.3.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34490OsAffx.22848.4.S1_x_at1/1111+19702520..19706227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g34500NANA11+19707664..19713629retrotransposon protein, putative, unclassified
LOC_Os11g34510NANA11+19717657..19718808retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19155.1.S1_at--817--8131Chr11:19693117..19693141 (25 bp)
GGACATCGCCCGGACATTTGCTGCG
LOC_Os11g34470
OsAffx.19155.1.S1_at--635--1651Chr11:19693007..19693031 (25 bp)
AGCGCAACGTACGACGACGTCCAGG
LOC_Os11g34470
OsAffx.19155.1.S1_at--67--10571Chr11:19692968..19692990 (23 bp)
TTCTTCGCTGGATGCATGATTGGGA
LOC_Os11g34470
OsAffx.19155.1.S1_at--634--4051Chr11:19692172..19692196 (25 bp)
CGATGCATTGAGACCGGTGCGTCGA
LOC_Os11g34470
OsAffx.19155.1.S1_at--333--7791Chr11:19692157..19692181 (25 bp)
GGTGCGTCGAGGTTCTACTACGACA
LOC_Os11g34470
OsAffx.19155.1.S1_at--456--8771Chr11:19692063..19692087 (25 bp)
TGATAAATGCCTCTAGCAACCACGC
LOC_Os11g34470
OsAffx.19155.1.S1_at--858--6171Chr11:19692037..19692061 (25 bp)
GAGGAGACCAGCACAAAGCGCCCGC
LOC_Os11g34470
OsAffx.19155.1.S1_at--601--9291Chr11:19691929..19691950 (22 bp)
TCCGTTGTCATCTTGTCGATGCTTT
LOC_Os11g34470
OsAffx.19155.1.S1_at--645--8711Chr11:19691916..19691940 (25 bp)
TGTCGATGCTTTTGCCTGACGGCGG
LOC_Os11g34470
OsAffx.19155.1.S1_at--1026--591Chr11:19691889..19691913 (25 bp)
ATGCCCGATGCATCCCATGAAGAAG
LOC_Os11g34470
OsAffx.19155.1.S1_at--750--5371Chr11:19691871..19691895 (25 bp)
GAAGAAGATGGCTTGGACGTCGTCT
LOC_Os11g34470
Target Sequence 
GGACATCGCCCGGACATTTGCTGCGCTTCAGCTCCACGCGCGCCGGGCCGAGATCACCACGCTCTTTGGCCACGCCTGGA
GCGTGCTCCTCATCATCGCCGACGAGCAGCAGCGCAACGTACGACGACGTCCAGGCCTCGTCCATGCCATCTTCTTCGCT
GGATGCATGATTGGGAGTAGCATTTTCATATTAGATGGACGATGCATTGAGACCGGTGCGTCGAGGTTCTACTACGACAG
CAGCCGGAAGCGCCTGAGGCCGGCGCGCCAGAGGCGGCGAGAGGAAGAGAAGGAGAGGATGAAGAAGATGATAAATGCCT
CTAGCAACCACGCCGAGGAGACCAGCACAAAGCGCCCGCAGCTGCCACCGCCCGAACTTCCCACGCGTGCCATGCACTCG
TGCCTCCGCCCTCCGTTGTCATCTTGTCGATGCTTTTGCCTGACGGCGGCGATGCCCGATGCATCCCATGAAGAAGATGG
CTTGGACGTCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis