Browse Element(s) Details


OsAffx.19234.1.S1_at

Description tigr:9639.m03509
TID=OsAffx.19234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3862010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38580Os.18929.1.S1_s_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580Os.18814.1.S1_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_x_at10/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_at8/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38590OsAffx.31372.1.S1_at11/1111+22368315..22368875hypothetical protein
LOC_Os11g38600NANA11+22370840..22371268Kinetochore protein, putative
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein
LOC_Os11g38630OsAffx.19235.1.S1_at11/1111+22399361..22406979hypothetical protein
LOC_Os11g38640OsAffx.7344.1.S1_at11/1111+22409356..22415812expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19234.1.S1_at--299--5471Chr11:22391150..22391174 (25 bp)
GAACTGCACGTGTCAGAAGCTCCTT
LOC_Os11g38620
OsAffx.19234.1.S1_at--337--5411Chr11:22391165..22391189 (25 bp)
GAAGCTCCTTTGCATTTCTATTTCA
LOC_Os11g38620
OsAffx.19234.1.S1_at--665--2851Chr11:22391483..22391507 (25 bp)
AAGTCCTTTGCAGATCTTCCAGTTG
LOC_Os11g38620
OsAffx.19234.1.S1_at--967--5451Chr11:22391516..22391540 (25 bp)
GAACGGTTTTGGTACCTGCAGGACG
LOC_Os11g38620
OsAffx.19234.1.S1_at--712--1111Chr11:22391567..22391591 (25 bp)
AGTGTTGGCCACTTTCTTTTGAATA
LOC_Os11g38620
OsAffx.19234.1.S1_at--346--331Chr11:22391589..22391612 (24 bp)
ATACACCGCACTTCTTTACAGTAGT
LOC_Os11g38620
OsAffx.19234.1.S1_at--229--5151Chr11:22392037..22392061 (25 bp)
GCAAAAGCCATGTCAGCCTGTCTGA
LOC_Os11g38620
OsAffx.19234.1.S1_at--146--5491Chr11:22392060..22392084 (25 bp)
GAACTTCTAGTTGGCTGCACATCTC
LOC_Os11g38620
OsAffx.19234.1.S1_at--39--8471NONE
TGGCCTCAATGATCTGCTGTTCTGA
NONE
OsAffx.19234.1.S1_at--119--6931Chr11:22392936..22392960 (25 bp)
GTATGTCTGTATTTCTCGGGACCAA
LOC_Os11g38620
OsAffx.19234.1.S1_at--1140--8051Chr11:22393123..22393147 (25 bp)
GGAGCGTTTGGTACAGCGTTTTACA
LOC_Os11g38620
Target Sequence 
GAACTGCACGTGTCAGAAGCTCCTTTGCATTTCTATTTCAACAACAAGATTCAGGGACAAGTAATCAAGTCCTTTGCAGA
TCTTCCAGTTGCAATTGATGAACGGTTTTGGTACCTGCAGGACGAATGCCAGTCTTGTGGAAATCTGAAGAGTGTTGGCC
ACTTTCTTTTGAATACACCGCACTTCTTTACAGTAGTTTTGAAATGCACGGATAGTAGCAAAAGCCATGTCAGCCTGTCT
GAACTTCTAGTTGGCTGCACATCTCCCCCTGATATTACACTCGCAACTAAGTATACTCTGGCCTCAATGATCTGCTGTTC
TGACGGGCAGTATGTCTGTATTTCTCGGGACCAAAACAAATGGCTCATATATGACACCAAGACTATCGAGGCAGAAGATT
CCTGGGAGCGTTTGGTACAGCGTTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis