Browse Element(s) Details


OsAffx.19256.1.S1_at

Description tigr:9639.m03610
TID=OsAffx.19256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3955011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39530OsAffx.7355.1.S1_at10/1111+23035948..23044173Jacalin-like lectin domain containing protein, expressed
LOC_Os11g39540Os.53400.1.S1_at3/1111+23052236..2305714014-3-3, putative, expressed
LOC_Os11g39550OsAffx.19256.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39550OsAffx.31389.1.S1_at11/1111+23063912..23074165NB-ARC domain containing protein
LOC_Os11g39559OsAffx.31390.1.S1_at11/1111+23075816..23077153F-box domain containing protein
LOC_Os11g39568NANA11+23077514..23079658S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39580OsAffx.19257.1.S1_at11/1111+23080690..23083192hypothetical protein
LOC_Os11g39590OsAffx.19256.2.S1_at2/1111+23084301..23089072NB-ARC domain containing protein
LOC_Os11g39600OsAffx.31389.1.S1_at11/1111+23091535..23093947resistance protein, putative
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19256.1.S1_at--199--5351Chr11:23064518..23064542 (25 bp)
GAAGTTCCTTTCCTTACGAGGATGC
LOC_Os11g39550
OsAffx.19256.1.S1_at--1129--911Chr11:23064454..23064478 (25 bp)
AGGCAGCTGCAGACCCTGGATATCA
LOC_Os11g39550
OsAffx.19256.1.S1_at--839--931Chr11:23064430..23064454 (25 bp)
AGGCACACCTCTATTGTCAGATTGC
LOC_Os11g39550
OsAffx.19256.1.S1_at--811--7111Chr11:23064415..23064439 (25 bp)
GTCAGATTGCCAACAGTCATCGTCA
LOC_Os11g39550
OsAffx.19256.1.S1_at--258--5031Chr11:23064377..23064401 (25 bp)
GCAGTACATTCGTGGTGGCACCAAA
LOC_Os11g39550
OsAffx.19256.1.S1_at--1012--611Chr11:23064231..23064255 (25 bp)
ATGCTGGTGATCCTTGCTCTGGTAT
LOC_Os11g39550
OsAffx.19256.1.S1_at--673--971Chr11:23064186..23064210 (25 bp)
AGGAGCTGACGGCATTGCACACGCT
LOC_Os11g39550
OsAffx.19256.1.S1_at--744--2951Chr11:23064130..23064154 (25 bp)
AAGGCCTTCCTGAAAGAGCTCAAGA
LOC_Os11g39550
OsAffx.19256.1.S1_at--205--2511Chr11:23064058..23064082 (25 bp)
AACATCCAGGAGCTGTGTTCTGCCG
LOC_Os11g39550
OsAffx.19256.1.S1_at--83--831Chr11:23063979..23064003 (25 bp)
ATGGTTCCAGTGATGACAGGCTCAA
LOC_Os11g39550
OsAffx.19256.1.S1_at--158--9491Chr11:23063948..23063972 (25 bp)
TCTGCGGAACCGGATTGCTGAACAT
LOC_Os11g39550
Target Sequence 
GAAGTTCCTTTCCTTACGAGGATGCAAAATGGTCAGCCGCTTGCCAGACTCCTTGGGTGGCCTGAGGCAGCTGCAGACCC
TGGATATCAGGCACACCTCTATTGTCAGATTGCCAACAGTCATCGTCAAGCTGCATAAGCTGCAGTACATTCGTGGTGGC
ACCAAAGTCACATTGGGTGAAGAAGGCACATCTGCAAGCCTAGCAGCTGCTGAGACAGAGACACAACCAAAATGCAGAGG
CAGGCATGCTGGTGATCCTTGCTCTGGTATTGAGGTGCCCAGGGGGATCGAGGAGCTGACGGCATTGCACACGCTGGGCG
TCGTCAATGTCGGCGTCGCAGGTGGCAAGGCCTTCCTGAAAGAGCTCAAGAATCTCACGCAGCTGCGCAAGCTTGGGGTT
TCAGGCATCAACTGGAAAAACATCCAGGAGCTGTGTTCTGCCGTCTCGTGTCACCGCTACCTGGAGTCGCTGTCAGTGCG
GCTGGACAAGGACGAGCATGGTTCCAGTGATGACAGGCTCAAGGAAGATCTGCGGAACCGGATTGCTGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis