Browse Element(s) Details


OsAffx.19364.1.S1_at

Description tigr:9639.m04100
TID=OsAffx.19364.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4423011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44210Os.35344.3.S1_x_at8/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44210Os.35344.18.S1_x_at7/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44210OsAffx.22940.5.S1_x_at2/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44220OsAffx.19363.1.S1_at10/1111+26208336..26209893hypothetical protein
LOC_Os11g44230OsAffx.19364.1.S1_at11/1111+26217111..26219293hypothetical protein
LOC_Os11g44240Os.35344.3.S1_x_at8/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240Os.35344.18.S1_x_at5/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_at4/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_x_at3/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44250OsAffx.31467.2.S1_at11/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44250Os.56139.1.S1_at2/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.4.S1_at11/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.3.S1_s_at1/1111+26244095..26245558Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19364.1.S1_at--505--3431Chr11:26218352..26218376 (25 bp)
CAGAGGTTTGACTCATCGTGATGAT
LOC_Os11g44230
OsAffx.19364.1.S1_at--1005--7391Chr11:26218369..26218393 (25 bp)
GTGATGATATGTCCACAGACGCGAA
LOC_Os11g44230
OsAffx.19364.1.S1_at--992--4631Chr11:26218860..26218884 (25 bp)
GCGTTAGCGACACTCTTGCGAAGGA
LOC_Os11g44230
OsAffx.19364.1.S1_at--549--7771Chr11:26218888..26218912 (25 bp)
GGTGCAAACCTGTGAACTTATCGTG
LOC_Os11g44230
OsAffx.19364.1.S1_at--36--4611Chr11:26219070..26219094 (25 bp)
GCGACGCCCGCATGATCGTGTGGTA
LOC_Os11g44230
OsAffx.19364.1.S1_at--649--8851Chr11:26219082..26219106 (25 bp)
TGATCGTGTGGTACAGCCAGCAGCC
LOC_Os11g44230
OsAffx.19364.1.S1_at--583--4511Chr11:26219104..26219128 (25 bp)
GCCGCAAAGGAGCATGATCCCGCTA
LOC_Os11g44230
OsAffx.19364.1.S1_at--764--7511Chr11:26219165..26219189 (25 bp)
GTGGAGCAGCCAGCCGAGCAGATTC
LOC_Os11g44230
OsAffx.19364.1.S1_at--1025--4071Chr11:26219179..26219203 (25 bp)
CGAGCAGATTCTGACGGTGGTGTAC
LOC_Os11g44230
OsAffx.19364.1.S1_at--316--831Chr11:26219207..26219231 (25 bp)
ATGGAGTATTACCTCCAGGTCCTCC
LOC_Os11g44230
OsAffx.19364.1.S1_at--278--8291Chr11:26219239..26219263 (25 bp)
GGCTAGGCGCCAGATGGTGATCCCT
LOC_Os11g44230
Target Sequence 
CAGAGGTTTGACTCATCGTGATGATATGTCCACAGACGCGAAATGGGTGTTGGGATGGATACAAAAGGACCTCGCGGACG
GGAACGGCAGCCGGTTCGCAGCATCAATCCCAGCAGAAGAGGGCAGTGGTGGCGGCGGCGTTAGCGACACTCTTGCGAAG
GAGGTGGTGCAAACCTGTGAACTTATCGTGCAGGAGGCCGGGAGCGCGAGGCAGAACCAGGGGCATGTGCAGCGGCTGAA
GCAGCTGGCGCAGCAGGTGGCCGACCTGATGCAGCACCCGCAGGCGTACGGGCTAACGCGCGAGGCGGAGACGAGAGAGA
TGGTGAACAACCTCAAGGAAGTCCTCGGCGACGCCCGCATGATCGTGTGGTACAGCCAGCAGCCGCAAAGGAGCATGATC
CCGCTACCCCTGATATCCTGCAGCGGCGGCCGCGGCAGAGGCGTGGAGCAGCCAGCCGAGCAGATTCTGACGGTGGTGTA
CAAGATGGAGTATTACCTCCAGGTCCTCCCCGTCATGGCTAGGCGCCAGATGGTGATCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis