Browse Element(s) Details


OsAffx.19391.1.S1_at

Description tigr:9639.m04227
TID=OsAffx.19391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4545011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45410OsAffx.31491.1.S1_x_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410OsAffx.31491.1.S1_at10/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45410Os.52021.1.S1_at4/1111+26985672..26990895pentatricopeptide, putative
LOC_Os11g45420NANA11+26992018..26994884retrotransposon protein, putative, unclassified
LOC_Os11g45430OsAffx.22272.1.S1_at3/1111+26996392..26996955transposon protein, putative, unclassified
LOC_Os11g45440OsAffx.199.1.S1_at1/1111+27006026..27007478retrotransposon protein, putative, unclassified
LOC_Os11g45450OsAffx.19391.1.S1_at11/1111+27012632..27013159hypothetical protein
LOC_Os11g45460OsAffx.31492.1.S1_at11/1111+27015003..27016551hypothetical protein
LOC_Os11g45470NANA11+27023183..27023653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45480Os.46306.1.S1_x_at2/1111+27024226..27026514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45490NANA11+27029019..27031973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45500NANA11+27035278..27035715retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19391.1.S1_at--794--951Chr11:27013099..27013123 (25 bp)
AGGACTGAAGTTGATTCCACAAACA
LOC_Os11g45450
OsAffx.19391.1.S1_at--978--6571Chr11:27013073..27013097 (25 bp)
GATTCCGATAACCATCGACATGCTG
LOC_Os11g45450
OsAffx.19391.1.S1_at--4--2131Chr11:27012918..27012942 (25 bp)
ACAGTGAAGCTTCTGGTTCTGGTAC
LOC_Os11g45450
OsAffx.19391.1.S1_at--1148--6711Chr11:27012903..27012927 (25 bp)
GTTCTGGTACTTCTGGACGCAACAA
LOC_Os11g45450
OsAffx.19391.1.S1_at--1121--2731Chr11:27012852..27012876 (25 bp)
AAGAAGATGCCAACCTCGAGTTCAA
LOC_Os11g45450
OsAffx.19391.1.S1_at--688--9211Chr11:27012822..27012846 (25 bp)
TCCAAGACAGTGTTGACTATGCGGT
LOC_Os11g45450
OsAffx.19391.1.S1_at--52--5711Chr11:27012808..27012832 (25 bp)
GACTATGCGGTTAATCATGCTCTCA
LOC_Os11g45450
OsAffx.19391.1.S1_at--533--3531Chr11:27012793..27012817 (25 bp)
CATGCTCTCATCAATCAGTCAGGAA
LOC_Os11g45450
OsAffx.19391.1.S1_at--294--7631Chr11:27012707..27012731 (25 bp)
GGGAGCCAGAGGTCCAGCGTTCTTC
LOC_Os11g45450
OsAffx.19391.1.S1_at--779--1571Chr11:27012692..27012716 (25 bp)
AGCGTTCTTCCCTGGTGACAAGTTT
LOC_Os11g45450
OsAffx.19391.1.S1_at--913--10471Chr11:27012662..27012686 (25 bp)
TTACAGGACCTTGGTTACAGATGGA
LOC_Os11g45450
Target Sequence 
AGGACTGAAGTTGATTCCACAAACAAGATTCCGATAACCATCGACATGCTGACACCAGAGCAAAGGGGAACAGTGATCCA
GAAGCATAAGGTAGAAATCCCACCCCCTTCAAACAGTGAAGCTTCTGGTTCTGGTACTTCTGGACGCAACAAGGAAGAAG
GCAAAGAAGGACTTAAACAAGAAGATGCCAACCTCGAGTTCAAGAATTTCCAAGACAGTGTTGACTATGCGGTTAATCAT
GCTCTCATCAATCAGTCAGGAATCTTAGCTAATGTGATGAGCAATGTGATGGAGAAGATGATGGATTGCAAGTTTGAAGA
AAGGGGAGCCAGAGGTCCAGCGTTCTTCCCTGGTGACAAGTTTCCTAATTACAGGACCTTGGTTACAGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis