Browse Element(s) Details


OsAffx.19399.1.S1_at

Description tigr:9639.m04284
TID=OsAffx.19399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4597011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45920Os.25268.1.A1_at10/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45920Os.51336.1.S1_at1/1111+27272805..27285902retrotransposon protein, putative, unclassified
LOC_Os11g45930Os.52347.1.S1_at11/1111+27286970..27291013NB-ARC domain containing protein, expressed
LOC_Os11g45940OsAffx.31502.1.S1_at11/1111+27292325..27293487hypothetical protein
LOC_Os11g45950OsAffx.7423.1.S1_at11/1111+27297369..27298159NAC-domain containing protein 90, putative, expressed
LOC_Os11g45960OsAffx.10621.1.S1_x_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45960OsAffx.10621.1.S1_at1/1111+27300098..27300436hypothetical protein
LOC_Os11g45970OsAffx.19399.1.S1_at11/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.16187.1.S1_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45970OsAffx.29322.1.S1_x_at1/1111+27305443..27311623NB-ARC domain containing protein, expressed
LOC_Os11g45980OsAffx.31503.1.S1_at7/1111+27313501..27317699NB-ARC domain containing protein
LOC_Os11g45990Os.52208.1.S1_at11/1111+27321847..27328435von Willebrand factor type A domain containing protein, expressed
LOC_Os11g46000Os.5809.1.S1_s_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.5809.1.S1_at11/1111+27334705..27338317expressed protein
LOC_Os11g46000Os.54953.1.S1_at11/1111+27334705..27338317expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19399.1.S1_at--1038--5311Chr11:27306019..27306043 (25 bp)
GAAGTGGATCAGTCTACTCAGCAAG
LOC_Os11g45970
OsAffx.19399.1.S1_at--407--2011Chr11:27306004..27306028 (25 bp)
ACTCAGCAAGCTCCGTATTTTGAAG
LOC_Os11g45970
OsAffx.19399.1.S1_at--927--731Chr11:27305945..27305969 (25 bp)
ATGTTCTCATGGGATTGCGTGCTCT
LOC_Os11g45970
OsAffx.19399.1.S1_at--835--8691Chr11:27305902..27305926 (25 bp)
TGTCCACACCAAGCCTACAGAAATT
LOC_Os11g45970
OsAffx.19399.1.S1_at--542--8351Chr11:27305868..27305892 (25 bp)
GGCGGTATAGGATTCAAGGCTCTCA
LOC_Os11g45970
OsAffx.19399.1.S1_at--1082--4951Chr11:27305788..27305812 (25 bp)
GCATAGTCTCTATAAGCTCAAGCTT
LOC_Os11g45970
OsAffx.19399.1.S1_at--518--8291Chr11:27305718..27305742 (25 bp)
GGCATTCAGTACTTATATGGCCTCA
LOC_Os11g45970
OsAffx.19399.1.S1_at--3--10111Chr11:27305703..27305727 (25 bp)
TATGGCCTCAAAGAGATCTCCGTAA
LOC_Os11g45970
OsAffx.19399.1.S1_at--852--1231Chr11:27305633..27305657 (25 bp)
AGTTGGCGTTCATGATCGACTCAGG
LOC_Os11g45970
OsAffx.19399.1.S1_at--509--6391Chr11:27305620..27305644 (25 bp)
GATCGACTCAGGTCTGCATGACAGA
LOC_Os11g45970
OsAffx.19399.1.S1_at--311--6371Chr11:27305494..27305518 (25 bp)
GATCCTGGAGGATGACTCTGACGAA
LOC_Os11g45970
Target Sequence 
GAAGTGGATCAGTCTACTCAGCAAGCTCCGTATTTTGAAGATTGGGGTAAGGGAACTAGTGAGAAATGATATTGATGTTC
TCATGGGATTGCGTGCTCTCACTGATCTCTCGCTACATGTCCACACCAAGCCTACAGAAATTATTTTCTTTGGCGGTATA
GGATTCAAGGCTCTCAAGTACTTAAAGATCAATTGCTGTGTAGCTTGGTTGAAATTTGATATGGGTGCAATGCATAGTCT
CTATAAGCTCAAGCTTGGTTATAATGTCGATGGAGTTGATCAAGAAAGTACGATACCAGTTGGCATTCAGTACTTATATG
GCCTCAAAGAGATCTCCGTAAAAATTGGTGGTGCTGATCCTGAGAAATACGACAGAAGGGCTGAAGAGTTGGCGTTCATG
ATCGACTCAGGTCTGCATGACAGATGCATGAGCATCACTTTACAATGCGTGAGGCAGATGTTTGATTTCAACGAAGATAA
GAGTAGCCTGACACATGAAGAACAAAGGAAATTGAAACAACAGGAGATCCTGGAGGATGACTCTGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis