Browse Element(s) Details


OsAffx.19414.1.S1_at

Description tigr:9639.m04368
TID=OsAffx.19414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4695011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46910Os.14491.2.S1_x_at3/1111+27629381..27638187transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46910Os.47463.1.S1_x_at1/1111+27629381..27638187transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46920NANA11+27639983..27643130retrotransposon protein, putative, unclassified
LOC_Os11g46930NANA11+27643774..27649590transposon protein, putative, unclassified
LOC_Os11g46940NANA11+27651028..27652101transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46950OsAffx.19414.1.S1_at11/1111+27656847..27664849Protein kinase domain containing protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_at4/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.2.S1_x_at2/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_x_at1/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.2.S1_x_at11/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_at9/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_x_at8/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46980OsAffx.19417.1.S1_at4/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.2.S1_x_at2/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.1.S1_x_at1/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46990NANA11+27683700..27684131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g47000OsAffx.19417.1.S1_x_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.1.S1_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_x_at8/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_at4/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.31524.1.S1_x_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000Os.46824.2.S1_at1/1111+27688448..27692198Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19414.1.S1_at--989--5411Chr11:27664333..27664357 (25 bp)
GAAGCCTCCCAATAGAATTTGTCAA
LOC_Os11g46950
OsAffx.19414.1.S1_at--547--731Chr11:27664404..27664428 (25 bp)
ATGTTGTCGTCTACAGATGCACTGT
LOC_Os11g46950
OsAffx.19414.1.S1_at--968--2251Chr11:27664552..27664576 (25 bp)
AAATATGCACGCGTGTGTCGTCCTA
LOC_Os11g46950
OsAffx.19414.1.S1_at--734--6531Chr11:27664584..27664608 (25 bp)
GATTTACACGTACGCCGACTGGATG
LOC_Os11g46950
OsAffx.19414.1.S1_at--771--7971Chr11:27664604..27664628 (25 bp)
GGATGAATGCAAGCCCGATCTTCAG
LOC_Os11g46950
OsAffx.19414.1.S1_at--877--6391Chr11:27664620..27664644 (25 bp)
GATCTTCAGGTTCTCGGTCAGTTGG
LOC_Os11g46950
OsAffx.19414.1.S1_at--724--6311Chr11:27664651..27664675 (25 bp)
GATGACTTTGCTAGCTTGTTGCCTC
LOC_Os11g46950
OsAffx.19414.1.S1_at--884--1491Chr11:27664685..27664709 (25 bp)
AGCACAGCAGATATCACGCACGTTG
LOC_Os11g46950
OsAffx.19414.1.S1_at--1125--10851Chr11:27664707..27664731 (25 bp)
TTGGTTTGAGTTTGCGTGACGCCGC
LOC_Os11g46950
OsAffx.19414.1.S1_at--837--3991Chr11:27664721..27664745 (25 bp)
CGTGACGCCGCATTGTAGTATTAAT
LOC_Os11g46950
OsAffx.19414.1.S1_at--588--3351Chr11:27664748..27664772 (25 bp)
CACCGTTTCTATTGTTACCGTTGCA
LOC_Os11g46950
Target Sequence 
GAAGCCTCCCAATAGAATTTGTCAACCGGTACAAAGACAACAACGAAAGGAGGAAGATGTATGACCAGGACATGTTGTCG
TCTACAGATGCACTGTATCCTTACTGCATGGAGTGCCTTGACAGGATGGCGGCCGTCGCGGTCCGGTGTCTCAAAAACAA
GGTGGAGAAGAGACCAACCATGGCGGATGTTGTCAAGGAGCTTAAGCAGTTGAGAGAGCAAATATGCACGCGTGTGTCGT
CCTAGATGATCGATTTACACGTACGCCGACTGGATGAATGCAAGCCCGATCTTCAGGTTCTCGGTCAGTTGGTCCGTCGA
TGACTTTGCTAGCTTGTTGCCTCTCGTTACCCAGCACAGCAGATATCACGCACGTTGGTTTGAGTTTGCGTGACGCCGCA
TTGTAGTATTAATTACACCGTTTCTATTGTTACCGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis