Browse Element(s) Details


OsAffx.19421.1.S1_at

Description tigr:9639.m02382
TID=OsAffx.19421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2670011/11hypothetical protein
LOC_Os05g164003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g037002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g389401/11hypothetical protein
LOC_Os08g212001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g306101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g130201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26650NANA11+14763111..14767615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26660OsAffx.24317.2.S1_x_at2/1111+14768263..14768643hypothetical protein
LOC_Os11g26660OsAffx.30665.1.A1_x_at1/1111+14768263..14768643hypothetical protein
LOC_Os11g26670NANA11+14773754..14779883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26680OsAffx.31287.1.S1_at1/1111+14782818..14786348transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g26690NANA11+14787007..14787324hypothetical protein
LOC_Os11g26700OsAffx.19421.1.S1_at11/1111+14789156..14792110hypothetical protein
LOC_Os11g26700OsAffx.18924.2.S1_x_at1/1111+14789156..14792110hypothetical protein
LOC_Os11g26710OsAffx.19030.1.S1_at11/1111+14794685..14795076hypothetical protein
LOC_Os11g26720OsAffx.7212.1.S1_at11/1111+14801716..14804775hypothetical protein
LOC_Os11g26720Os.53874.1.S1_at1/1111+14801716..14804775hypothetical protein
LOC_Os11g26730OsAffx.19031.1.S1_at11/1111+14816284..14817059hypothetical protein
LOC_Os11g26730OsAffx.23391.1.S1_at1/1111+14816284..14817059hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19421.1.S1_at--1137--5451Chr11:14789384..14789475 (25 bp)
GAACTGGTGTGCAAAACAGTGCATT
LOC_Os11g26700
OsAffx.19421.1.S1_at--927--9971Chr11:14789486..14789510 (25 bp)
TACCAGCGAGGCGAATAACACAAAA
LOC_Os11g26700
OsAffx.19421.1.S1_at--718--4671Chr11:14789688..14789846 (25 bp)
GCGGATATTACCGTTCTTCCAAAAT
LOC_Os11g26700
OsAffx.19421.1.S1_at--657--5917Chr12:7218103..7218127 (25 bp)
GAGCTCAATGATACATCCATTCAGA
LOC_Os12g13020
OsAffx.19421.1.S1_at--913--2352Chr11:14791456..14791480 (25 bp)
AAACCCACCCTTCCGTGGAATGCAG
LOC_Os11g26700
OsAffx.19421.1.S1_at--270--5275Chr11:14791473..14791497 (25 bp)
GAATGCAGCCCACGCCTGGATCAAT
LOC_Os11g26700
OsAffx.19421.1.S1_at--692--2093Chr11:14791502..14791526 (25 bp)
ACATCCGGCCCAAATGTGCATTTGG
LOC_Os11g26700
OsAffx.19421.1.S1_at--1010--5791Chr11:14791567..14791964 (25 bp)
GACCCACGGGACCTTCAAGATCTGG
LOC_Os11g26700
OsAffx.19421.1.S1_at--882--1874Chr11:14792017..14792041 (25 bp)
ACGAGGTATGTCAATGCTTGGAGAT
LOC_Os11g26700
OsAffx.19421.1.S1_at--1120--8035Chr11:14792036..14792060 (25 bp)
GGAGATATGCAAAGTACAGCCATCC
LOC_Os11g26700
OsAffx.19421.1.S1_at--419--1175Chr11:14792048..14792072 (25 bp)
AGTACAGCCATCCTGAAGGGAACAA
LOC_Os11g26700
Target Sequence 
GAACTGGTGTGCAAAACAGTGCATTTAAAAGGTATTACCAGCGAGGCGAATAACACAAAAACTCAAGAGAACGCATATCC
GTCCGCAATAAGTGGCCGTGTCACAAGCAACTGGTGGGAACAGTACTATGCGGATATTACCGTTCTTCCAAAATTCCCCA
AGTCTGCAAGAGAGCTCAATGATACATCCATTCAGAATATTCAGGCGGACATGTGCTACTTCATCCACCGCCCCAAACCC
ACCCTTCCGTGGAATGCAGCCCACGCCTGGATCAATTCCCACATCCGGCCCAAATGTGCATTTGGCTGTTCGTGTATTGC
TGTGTATTGCGGCTCGATACATGCCGACCCACGGGACCTTCAAGATCTGGAAAGTACAGCCATCCTGCTAGGGTTTGACG
ATCTGCAAGAGAAATATTGGAGACGAGGTATGTCAATGCTTGGAGATATGCAAAGTACAGCCATCCTGAAGGGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis