Browse Element(s) Details


OsAffx.19422.1.S1_at

Description tigr:9639.m04432
TID=OsAffx.19422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47449OsAffx.13772.1.S1_x_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47449OsAffx.13772.1.S1_at1/1111+28109841..28110805hypothetical protein
LOC_Os11g47451NANA11+28111713..28114492retrotransposon protein, putative, unclassified
LOC_Os11g47452NANA11+28115807..28117951retrotransposon protein, putative, unclassified
LOC_Os11g47440OsAffx.19422.1.S1_at11/1111+28134078..28134407hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_s_at11/1111+28141521..28144519hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_at10/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.29823.2.S1_x_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.32680.1.S1_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47460Os.10174.1.S1_at11/1111+28145896..28147303myb family transcription factor, putative, expressed
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19422.1.S1_at--77--4231Chr11:28134108..28134132 (25 bp)
CCGAAGACATATGTGCATGCGCAAT
LOC_Os11g47440
OsAffx.19422.1.S1_at--191--7331Chr11:28134120..28134144 (25 bp)
GTGCATGCGCAATCAGGTGGAAAGT
LOC_Os11g47440
OsAffx.19422.1.S1_at--509--411Chr11:28134131..28134155 (25 bp)
ATCAGGTGGAAAGTGGCAGAGCCTC
LOC_Os11g47440
OsAffx.19422.1.S1_at--699--3791Chr11:28134153..28134177 (25 bp)
CTCCAAGAAGGAGGCTTTTTACAGT
LOC_Os11g47440
OsAffx.19422.1.S1_at--137--5311Chr11:28134159..28134183 (25 bp)
GAAGGAGGCTTTTTACAGTCCAGTG
LOC_Os11g47440
OsAffx.19422.1.S1_at--1133--911Chr11:28134164..28134188 (25 bp)
AGGCTTTTTACAGTCCAGTGGAGGA
LOC_Os11g47440
OsAffx.19422.1.S1_at--532--1131Chr11:28134175..28134195 (21 bp)
AGTCCAGTGGAGGAGGTACCAAATT
LOC_Os11g47440
OsAffx.19422.1.S1_at--456--6971Chr11:28134328..28134352 (25 bp)
GTACCAAATTGGAGCGGAACACCAT
LOC_Os11g47440
OsAffx.19422.1.S1_at--680--3171Chr11:28134334..28134358 (25 bp)
AATTGGAGCGGAACACCATCTGTCC
LOC_Os11g47440
OsAffx.19422.1.S1_at--86--1731Chr11:28134348..28134372 (25 bp)
ACCATCTGTCCGATGCAGGCGTCTA
LOC_Os11g47440
OsAffx.19422.1.S1_at--103--3871Chr11:28134353..28134377 (25 bp)
CTGTCCGATGCAGGCGTCTACTCAT
LOC_Os11g47440
Target Sequence 
CCGAAGACATATGTGCATGCGCAATCAGGTGGAAAGTGGCAGAGCCTCCAAGAAGGAGGCTTTTTACAGTCCAGTGGAGG
AGGTACCAAATTGGAGCGGAACACCATCTGTCCGATGCAGGCGTCTACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis