Browse Element(s) Details


OsAffx.19452.1.S1_x_at

Description tigr:9640.m00113
TID=OsAffx.19452.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0211011/11hypothetical protein
LOC_Os11g0217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02060Os.55595.1.S1_at5/1112+613316..614845Cationic peroxidase 1 precursor, putative, expressed
LOC_Os12g02070Os.50351.1.S1_s_at3/1112+615651..616635expressed protein
LOC_Os12g02070Os.50351.1.S1_at1/1112+615651..616635expressed protein
LOC_Os12g02080Os.11549.1.S1_at11/1112+622582..625113Peroxidase 52 precursor, putative, expressed
LOC_Os12g02090OsAffx.31549.2.S1_x_at3/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02090OsAffx.31549.1.S1_x_at2/1112+626213..626638TCP family transcription factor containing protein
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19452.1.S1_x_at--623--10752Chr12:638039..638063 (25 bp)
TTGACGTCGCCGAGGATCACCGGGC
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--934--7952Chr12:638026..638050 (25 bp)
GGATCACCGGGCACAGGCACCTCAA
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--737--7592Chr12:638018..638042 (25 bp)
GGGCACAGGCACCTCAACGTCCGGT
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--898--932Chr12:637898..637922 (25 bp)
AGGAACGACGCGCACGTCGTCAGCC
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--421--8232Chr12:637820..637844 (25 bp)
GGCATGCCCGGGATCAAGGTGCCCG
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--225--5432Chr12:637650..637674 (25 bp)
GAACCCCGGGAAGCGCTGGCGGCTT
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--4--952Chr12:637604..637628 (25 bp)
AGGACGCGGGCCTCCGACGAGACCA
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--123--7812Chr12:637556..637580 (25 bp)
GGTCTCATCGCTTCCGACGGCGTCG
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--314--8372Chr12:637538..637562 (25 bp)
GGCGTCGCCATCATCACAGAAGCAA
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--103--392Chr12:637526..637550 (25 bp)
ATCACAGAAGCAACCACGACGAGCA
LOC_Os12g02110
OsAffx.19452.1.S1_x_at--896--5372Chr12:637520..637544 (25 bp)
GAAGCAACCACGACGAGCAAGACGA
LOC_Os12g02110
Target Sequence 
TTGACGTCGCCGAGGATCACCGGGCACAGGCACCTCAACGTCCGGTCACCCTCNGCCGCCGCCGCCGTGCTGTTCAGGAA
CATCCCCAGCCCGCCGCAGCACTCGCTCGCCGGCGTNGGNGTCTCCGCCTCCGCCCCCGTCAGGAACGACGCGCACGTCG
TCAGCCCCGCCAGCGACGTCACGCAGTCCGNCGNCGACGANNCGNCGNNCCGCCGCTGCCCGGCATGCCCGGGATCAAGG
TGCCCGGCGGCGTCGTCTGCGACGACCTCCCGCACGGCGGCGGCAGCGNNCCNCCGNCGGGTGGAGACAGTGGCAGNNCG
GGGACTGACGACGACGACGNNGNCGGNGGTGATGGCTTCGGCGGCGCCGCNCGCGGCGACGGCCTGGCTCCGGGGAACCC
CGGGAAGCGCTGGCGGCTTCCCGGGAAGCCGGGGAAGCGGAGGACGCGGGCCTCCGACGAGACCAAGGCGGCNNNTGCCT
TCCTCCTCGGTCTCATCGCTTCCGACGGCGTCGCCATCATCACAGAAGCAACCACGACGAGCAAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19452.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis