Browse Element(s) Details


OsAffx.19489.2.S1_at

Description tigr:9629.m07140
TID=OsAffx.19489.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g470602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47010NANA6+28512372..28512962retrotransposon protein, putative, unclassified
LOC_Os06g47020OsAffx.15960.1.S1_at11/116+28513438..28514082ZmEBE-2 protein, putative
LOC_Os06g47030OsAffx.15961.1.S1_at11/116+28522996..28523217hypothetical protein
LOC_Os06g47040Os.53923.1.S1_at11/116+28523561..28524827expressed protein
LOC_Os06g47050OsAffx.28143.1.S1_at10/116+28525553..28528215hypothetical protein
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein
LOC_Os06g47080OsAffx.828.1.S1_x_at1/116+28539405..28540139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47090OsAffx.30013.5.S1_x_at11/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_x_at3/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47090OsAffx.30013.1.S1_x_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47100OsAffx.15963.1.S1_at11/116+28546658..28548833F-box domain containing protein, expressed
LOC_Os06g47110OsAffx.15964.1.S1_at11/116+28550662..28552713COBRA-like protein 11 precursor, putative, expressed
LOC_Os06g47120OsAffx.28145.1.S1_at11/116+28554885..28556849hypothetical protein
LOC_Os06g47130OsAffx.5133.1.S1_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.11931.1.S1_s_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.31991.1.S1_at2/116+28557353..28563764C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19489.2.S1_at--420--9532Chr06:28531010..28531034 (25 bp)
TCTCACTCTTCTCTCCTGTTGCAAG
LOC_Os06g47060
OsAffx.19489.2.S1_at--1128--1992Chr06:28531007..28531030 (24 bp)
ACTCTTCTCTCCTGTTGCAAGCCGA
LOC_Os06g47060
OsAffx.19489.2.S1_at--1010--9491Chr01:42182970..42182994 (25 bp)
TCTCCTGTTGCAAGCCGACCGGCAG
NONE
OsAffx.19489.2.S1_at--637--5831Chr01:42182954..42182978 (25 bp)
GACCGGCAGCGAACACGGTGGCACC
NONE
OsAffx.19489.2.S1_at--802--1031Chr01:42182866..42182890 (25 bp)
AGGTCGTGGCGCTGTCGTCATCATC
NONE
OsAffx.19489.2.S1_at--192--7191Chr01:42182864..42182888 (25 bp)
GTCGTGGCGCTGTCGTCATCATCGT
NONE
OsAffx.19489.2.S1_at--105--4511Chr01:42182752..42182804 (25 bp)
GCCGCGGCTGGTGCGTTTTTGTACA
NONE
OsAffx.19489.2.S1_at--218--4691Chr01:42182749..42182801 (25 bp)
GCGGCTGGTGCGTTTTTGTACAGCA
NONE
OsAffx.19489.2.S1_at--1062--3891Chr01:42182745..42182779 (25 bp)
CTGGTGCGTTTTTGTACAGCAGGCA
NONE
OsAffx.19489.2.S1_at--522--5031Chr01:42182511..42182535 (25 bp)
GCAGATAATCAAAATTCTTCTTCCA
NONE
OsAffx.19489.2.S1_at--703--6451Chr01:42182508..42182532 (25 bp)
GATAATCAAAATTCTTCTTCCATCC
NONE
Target Sequence 
TCTCACTCTTCTCTCCTGTTGCAAGCCGACCGGCAGCGAACACGGTGGCACCGGTGGTGCTGCAGGGGGCACACGGCGGA
GGTGGGCGGCGCTGGTGCCGAGGAGGAGGAGGAGGAGGTCGTGGCGCTGTCGTCATCATCGTCCTCGGCGCCGGGGAAGA
AGGTGGGCGCGGCGGCGGCGGCGGCGGAGGCTAGGGGGTTTGCCGCGGCTGGTGCGTTTTTGTACAGCAGGCAGGCGTCG
GTGGCGGCGCCCAAGAGCGGGCAGCTCCCGGGGTGCGGCGCCCGGGGTTGCTGGCACATGCGGTGCGGCGCTGCCGTCGA
CCTCGCCCTCGACACGCTCGCCGCCGCGCGCTCCTTCGGCGTCGAGCAGCTCGCCCTGCTGGTTCAGCTGCAGATAATCA
AAATTCTTCTTCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19489.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis