Browse Element(s) Details


OsAffx.19507.1.S1_at

Description tigr:9640.m00480
TID=OsAffx.19507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0562010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05570Os.46012.2.S1_x_at5/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.27088.1.A1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05570Os.46012.3.S1_x_at3/1112+2554166..2558875retrotransposon protein, putative, unclassified
LOC_Os12g05580OsAffx.7492.1.S1_at11/1112+2561789..2562382expressed protein
LOC_Os12g05590Os.57548.1.S1_at11/1112+2564215..2565564CENTRORADIALIS, putative, expressed
LOC_Os12g05600Os.52940.1.S1_at11/1112+2570685..2572881hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os12g05609OsAffx.31600.1.S1_at11/1112+2573327..2574586F-box domain containing protein
LOC_Os12g05620OsAffx.19507.1.S1_at10/1112+2582896..2585408hypothetical protein
LOC_Os12g05630NANA12+2587415..2588307hydrolase, alpha/beta fold family protein, putative
LOC_Os12g05640OsAffx.31598.1.S1_at11/1112+2591074..2593791Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os12g05650Os.10673.1.S1_at11/1112+2594377..2599052ACT domain-containing protein, putative, expressed
LOC_Os12g05670OsAffx.31599.1.S1_at11/1112+2601226..2601649hypothetical protein
LOC_Os12g05660Os.23162.1.S1_a_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660Os.23162.1.S2_at11/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05660OsAffx.4983.1.S1_at1/1112+2601354..2606898Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g05680Os.54058.1.S1_at10/1112+2604798..2611491TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19507.1.S1_at--441--4471Chr12:2584594..2584618 (25 bp)
GCCTGCAACGCCACCAGAAATGGGA
LOC_Os12g05620
OsAffx.19507.1.S1_at--172--1611Chr12:2584543..2584567 (25 bp)
AGCGGTGACGCGACTGGTAGATTCC
LOC_Os12g05620
OsAffx.19507.1.S1_at--451--6931Chr12:2584527..2584551 (25 bp)
GTAGATTCCTCGAGGCGTTAGCGCT
LOC_Os12g05620
OsAffx.19507.1.S1_at--799--10831Chr12:2584503..2584527 (25 bp)
TTGTGAGGCAGTTACACCCCGAGAC
LOC_Os12g05620
OsAffx.19507.1.S1_at--599--4211Chr12:2584457..2584481 (25 bp)
CCGCCGATACGGGATAGCTATGCTA
LOC_Os12g05620
OsAffx.19507.1.S1_at--915--291Chr12:2584444..2584468 (25 bp)
ATAGCTATGCTATTCTGTCCAGATG
LOC_Os12g05620
OsAffx.19507.1.S1_at--1009--191Chr12:2584419..2584443 (25 bp)
ATTTCCTGTCGTGTTTGATCTGCAT
LOC_Os12g05620
OsAffx.19507.1.S1_at--930--6851Chr12:2584407..2584431 (25 bp)
GTTTGATCTGCATGGAGGCCTCGCA
LOC_Os12g05620
OsAffx.19507.1.S1_at--1050--10011Chr12:2584185..2584209 (25 bp)
TAGACATCATTCTAAGGCCACCGTC
LOC_Os12g05620
OsAffx.19507.1.S1_at--431--2331Chr12:2584154..2584178 (25 bp)
AAAGATTGCCTGCTTGCGTTCGATA
LOC_Os12g05620
OsAffx.19507.1.S1_at--559--11NONE
ATTCACTTCCAAGCGGTTTCGTCGG
NONE
Target Sequence 
GCCTGCAACGCCACCAGAAATGGGAAAAAAAACCAACAAAGGCGAAGGATCAGCGGTGACGCGACTGGTAGATTCCTCGA
GGCGTTAGCGCTTGTGAGGCAGTTACACCCCGAGACGGACGAGGAGGTGCTCTTCTACCGCCGATACGGGATAGCTATGC
TATTCTGTCCAGATGATTTCCTGTCGTGTTTGATCTGCATGGAGGCCTCGCAGTGCGATGACCCACGCTACATTCCAAAG
CACAAGTTCGGGAGACACATGTCTAGACATCATTCTAAGGCCACCGTCAAGTGCAAAGATTGCCTGCTTGCGTTCGATAC
GGCAGCAGCCGCTGGCAAGCATCACCACTACGCTCATTCACTTCCAAGCGGTTTCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis