Browse Element(s) Details


OsAffx.19514.1.S1_at

Description tigr:9640.m00527
TID=OsAffx.19514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0607011/11SEC14 cytosolic factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06050OsAffx.19817.1.S1_x_at10/1112+2808554..2809105MATE efflux family protein, putative
LOC_Os12g06060OsAffx.31606.1.S1_x_at11/1112+2815376..2821879Amino acid permease family protein, expressed
LOC_Os12g06070OsAffx.19514.1.S1_at11/1112+2829046..2830938SEC14 cytosolic factor, putative
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19514.1.S1_at--44--1611Chr12:2830392..2830416 (25 bp)
AGCTGAACAGCTTTTCCGTCTTGAG
LOC_Os12g06070
OsAffx.19514.1.S1_at--787--3351Chr12:2830399..2830423 (25 bp)
CAGCTTTTCCGTCTTGAGCCTGAAA
LOC_Os12g06070
OsAffx.19514.1.S1_at--798--9691Chr12:2830447..2830471 (25 bp)
TCAAATGTATATGCTGCCAGTGGAA
LOC_Os12g06070
OsAffx.19514.1.S1_at--488--8391Chr12:2830551..2830575 (25 bp)
GGCGAAAGGCAAGATTCATGTTTTT
LOC_Os12g06070
OsAffx.19514.1.S1_at--774--5971Chr12:2830589..2830613 (25 bp)
GAGAACACCCAGGAATAACTGATGT
LOC_Os12g06070
OsAffx.19514.1.S1_at--120--10591Chr12:2830656..2830680 (25 bp)
TTCTCACAGAGCCAACACACAATGT
LOC_Os12g06070
OsAffx.19514.1.S1_at--102--471Chr12:2830682..2830706 (25 bp)
ATCTGCATGATGTGCATGCTGACCA
LOC_Os12g06070
OsAffx.19514.1.S1_at--581--6171Chr12:2830711..2830735 (25 bp)
GAGGAGCTACTTAAACACCACAGTG
LOC_Os12g06070
OsAffx.19514.1.S1_at--1080--5411Chr12:2830800..2830824 (25 bp)
GAACCTTAGGATCTGCGGAGACTGT
LOC_Os12g06070
OsAffx.19514.1.S1_at--191--9131Chr12:2830813..2830837 (25 bp)
TGCGGAGACTGTCATTCCTTTATGA
LOC_Os12g06070
OsAffx.19514.1.S1_at--642--3411Chr12:2830856..2830880 (25 bp)
CAGAACGCCAAGTCATTGTCAGAGA
LOC_Os12g06070
Target Sequence 
AGCTGAACAGCTTTTCCGTCTTGAGCCTGAAAATGGAGGGAACCATGTTTTGCTATCAAATGTATATGCTGCCAGTGGAA
ACTGGGAGAATGTTGTTGTTGCAAGGAAGTATTTGAGGGATAGTGGTGCTAAAAAAGAGATGGGCAGGAGTTGGATTGAG
GCGAAAGGCAAGATTCATGTTTTTGTTGCTGGAGAGAGAGAACACCCAGGAATAACTGATGTATACAATAAGTTGGAGGA
AATTTACCATGAGATGAGAAAGATTTCTCACAGAGCCAACACACAATGTGATCTGCATGATGTGCATGCTGACCAAAAAG
AGGAGCTACTTAAACACCACAGTGAGAAACTAGCATTTGCTTTTGGTTTAATCAGCTTGCCCCCTAATATACCAATTACT
ATATACAAGAACCTTAGGATCTGCGGAGACTGTCATTCCTTTATGAAGATTGTATCCTGTATTACAGAACGCCAAGTCAT
TGTCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis