Browse Element(s) Details


OsAffx.19526.1.S1_at

Description tigr:9640.m00620
TID=OsAffx.19526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0695011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed
LOC_Os12g06920OsAffx.31625.1.S1_at11/1112+3374472..3380285NB-ARC domain containing protein
LOC_Os12g06930Os.47760.1.S1_x_at11/1112+3382996..3384738expressed protein
LOC_Os12g06940OsAffx.24595.2.S1_x_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.2.S1_at11/1112+3390049..3390500hypothetical protein
LOC_Os12g06940OsAffx.24595.1.S1_s_at7/1112+3390049..3390500hypothetical protein
LOC_Os12g06950OsAffx.19526.1.S1_at11/1112+3392650..3392997hypothetical protein
LOC_Os12g06960OsAffx.7508.1.S1_at11/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06960Os.29966.1.S1_x_at1/1112+3395128..3397423transposon protein, putative, unclassified
LOC_Os12g06970NANA12+3400895..3401314hypothetical protein
LOC_Os12g06980Os.14598.1.S1_at10/1112+3401730..3412835SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19526.1.S1_at--36--371Chr12:3392689..3392713 (25 bp)
ATAATGCTCCGGATAGGCCAGGTCG
LOC_Os12g06950
OsAffx.19526.1.S1_at--610--7531Chr12:3392730..3392754 (25 bp)
GTGGCAGCTTCAGGTATGTTGTGTC
LOC_Os12g06950
OsAffx.19526.1.S1_at--904--1371Chr12:3392755..3392779 (25 bp)
AGACCAGAGGTCTCCGATGCAGGAC
LOC_Os12g06950
OsAffx.19526.1.S1_at--93--4051Chr12:3392769..3392793 (25 bp)
CGATGCAGGACACCGCTTCTTGCTT
LOC_Os12g06950
OsAffx.19526.1.S1_at--1103--10711Chr12:3392788..3392812 (25 bp)
TTGCTTCCACTCCTTGAGGTTAGGA
LOC_Os12g06950
OsAffx.19526.1.S1_at--569--6111Chr12:3392811..3392835 (25 bp)
GAGTGACAGACCATGTCCTAAGGAA
LOC_Os12g06950
OsAffx.19526.1.S1_at--229--3611Chr12:3392844..3392868 (25 bp)
CATTGTTGTTGATAGAGCGGCTCTG
LOC_Os12g06950
OsAffx.19526.1.S1_at--731--5891Chr12:3392858..3392882 (25 bp)
GAGCGGCTCTGGTGGTAGCCATCAA
LOC_Os12g06950
OsAffx.19526.1.S1_at--299--711Chr12:3392897..3392921 (25 bp)
ATGAGGCTGTCGTTGCCACAGCACA
LOC_Os12g06950
OsAffx.19526.1.S1_at--34--2111Chr12:3392919..3392943 (25 bp)
ACATGGAACGGCACTCCTCTTGTAC
LOC_Os12g06950
OsAffx.19526.1.S1_at--585--9971Chr12:3392941..3392965 (25 bp)
TACCTGCCGCCCATGTTGAAGGCGA
LOC_Os12g06950
Target Sequence 
ATAATGCTCCGGATAGGCCAGGTCGGTGTGAGCAGTGGGCGGTGGCAGCTTCAGGTATGTTGTGTCAGACCAGAGGTCTC
CGATGCAGGACACCGCTTCTTGCTTCCACTCCTTGAGGTTAGGAGTGACAGACCATGTCCTAAGGAATACATTCTCATTG
TTGTTGATAGAGCGGCTCTGGTGGTAGCCATCAATGTAGACAAACCTGATGAGGCTGTCGTTGCCACAGCACATGGAACG
GCACTCCTCTTGTACCTGCCGCCCATGTTGAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis