Browse Element(s) Details


OsAffx.19560.1.S1_at

Description tigr:9640.m00833
TID=OsAffx.19560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0895011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08900OsAffx.31655.1.S1_at11/1112+4641198..4645998aminotransferase, putative
LOC_Os12g08909NANA12+4647826..4648633NA
LOC_Os12g08920Os.15789.1.S1_x_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920Os.15789.1.S1_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920OsAffx.18781.1.S1_x_at1/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08930OsAffx.7530.1.S1_s_at11/1112+4655467..4656003expressed protein
LOC_Os12g08940NANA12+4666699..4668135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08960OsAffx.27789.3.S1_s_at11/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08960OsAffx.27789.2.S1_x_at5/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08970OsAffx.31656.1.S1_at11/1112+4693822..4695965hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19560.1.S1_at--734--9972Chr12:4669989..4670013 (25 bp)
TACCTCCGCTGACAACATGGCCACT
LOC_Os12g08950
OsAffx.19560.1.S1_at--504--5151Chr12:4670127..4670151 (25 bp)
GCAACAGTTCCGGAGATCTTCAGCA
LOC_Os12g08950
OsAffx.19560.1.S1_at--236--2491Chr12:4670129..4670153 (25 bp)
AACAGTTCCGGAGATCTTCAGCATG
LOC_Os12g08950
OsAffx.19560.1.S1_at--236--3451Chr12:4670131..4670155 (25 bp)
CAGTTCCGGAGATCTTCAGCATGTA
LOC_Os12g08950
OsAffx.19560.1.S1_at--1040--6691Chr12:4670133..4670157 (25 bp)
GTTCCGGAGATCTTCAGCATGTACA
LOC_Os12g08950
OsAffx.19560.1.S1_at--14--6051Chr12:4670139..4670163 (25 bp)
GAGATCTTCAGCATGTACACAACAA
LOC_Os12g08950
OsAffx.19560.1.S1_at--286--6431Chr12:4670141..4670165 (25 bp)
GATCTTCAGCATGTACACAACAAAG
LOC_Os12g08950
OsAffx.19560.1.S1_at--1044--9551Chr12:4670143..4670167 (25 bp)
TCTTCAGCATGTACACAACAAAGGG
LOC_Os12g08950
OsAffx.19560.1.S1_at--107--2211Chr12:4670157..4670181 (25 bp)
ACAACAAAGGGCGTCAGCCCTGACG
LOC_Os12g08950
OsAffx.19560.1.S1_at--831--2191Chr12:4670160..4670184 (25 bp)
ACAAAGGGCGTCAGCCCTGACGCCG
LOC_Os12g08950
OsAffx.19560.1.S1_at--220--4771Chr12:4670189..4670213 (25 bp)
GCTGCGATTGTTTCCGTTTTTCCTT
LOC_Os12g08950
Target Sequence 
TACCTCCGCTGACAACATGGCCACTGGGCCGCAAATCAACATGGGAGACGTGGATTTCGATCTGAAGTCCAGCCTCATTA
CGATGGCGCAGGCTAGCCTATTCTGCGACAAGCCTAATGAGCATGCCAATGCACATCTGCAACAGTTCCGGAGATCTTCA
GCATGTACACAACAAAGGGCGTCAGCCCTGACGCCGTCAGGCTGCGATTGTTTCCGTTTTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis