Browse Element(s) Details


OsAffx.19566.1.S1_at

Description tigr:9640.m00852
TID=OsAffx.19566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0914010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os12g09130NANA12+4774852..4776983hypothetical protein
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein
LOC_Os12g09150NANA12+4786617..4787184retrotransposon protein, putative, unclassified
LOC_Os12g09164OsAffx.16205.1.S1_at2/1112+4789962..4793210hypothetical protein
LOC_Os12g09164OsAffx.25292.1.S1_at1/1112+4789962..4793210hypothetical protein
LOC_Os12g09180NANA12+4793546..4793836hypothetical protein
LOC_Os12g09190Os.23820.1.A1_at11/1112+4795465..4799050expressed protein
LOC_Os12g09200NANA12+4801307..4803874retrotransposon protein, putative, unclassified
LOC_Os12g09210Os.49901.1.S1_at11/1112+4806482..4809275retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19566.1.S1_at--747--9431NONE
TCGGTGGCGGAGTTGCCAACATGAT
NONE
OsAffx.19566.1.S1_at--41--2111Chr12:4781478..4781502 (25 bp)
ACATGATTTTTTGCCACTCCGCTTG
LOC_Os12g09140
OsAffx.19566.1.S1_at--505--4931Chr12:4781498..4781522 (25 bp)
GCTTGGGACGTCTTCATCTACATTA
LOC_Os12g09140
OsAffx.19566.1.S1_at--477--451Chr12:4781513..4781537 (25 bp)
ATCTACATTATGACCAAGCCGGAGA
LOC_Os12g09140
OsAffx.19566.1.S1_at--380--2651Chr12:4781528..4781552 (25 bp)
AAGCCGGAGATAGATCCTACCAATA
LOC_Os12g09140
OsAffx.19566.1.S1_at--309--3112Chr12:4781549..4781573 (25 bp)
AATATCCTCCCCATCTCATTGGAGG
LOC_Os12g09140
OsAffx.19566.1.S1_at--235--2191Chr12:4781621..4781645 (25 bp)
ACACAAGAAGCACTTTTGGCGGGTT
LOC_Os12g09140
OsAffx.19566.1.S1_at--394--7912Chr12:4781642..4781666 (25 bp)
GGTTGCTTCATCAAGACTCGTCAAG
LOC_Os12g09140
OsAffx.19566.1.S1_at--766--9731Chr12:4781662..4781686 (25 bp)
TCAAGGAATTGTTCGTAAGCCCGGT
LOC_Os12g09140
OsAffx.19566.1.S1_at--1136--6691Chr12:4781685..4781709 (25 bp)
GTTCTACACCAAAAGTCACCGTCAA
LOC_Os12g09140
OsAffx.19566.1.S1_at--196--7111Chr12:4781699..4781875 (25 bp)
GTCACCGTCAACGAGTTCTCTTATG
LOC_Os12g09140
Target Sequence 
TCGGTGGCGGAGTTGCCAACATGATTTTTTGCCACTCCGCTTGGGACGTCTTCATCTACATTATGACCAAGCCGGAGATA
GATCCTACCAATATCCTCCCCATCTCATTGGAGGATTTGGATGAGGAGCAACCTCGGGAGATTGAACAACATCTAAAGGC
GACACAAGAAGCACTTTTGGCGGGTTGCTTCATCAAGACTCGTCAAGGAATTGTTCGTAAGCCCGGTTCTACACCAAAAG
TCACCGTCAACGAGTTCTCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis