Browse Element(s) Details


OsAffx.19590.1.S1_at

Description tigr:9640.m00974
TID=OsAffx.19590.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10330Os.54234.1.S1_at11/1112+5468030..5470355NB-ARC domain containing protein, expressed
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10350OsAffx.31679.1.S1_at11/1112+5481289..5481552hypothetical protein
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein
LOC_Os12g10380NANA12+5496679..5497035hypothetical protein
LOC_Os12g10390OsAffx.31681.1.S1_at11/1112+5497827..5499710NB-ARC domain containing protein
LOC_Os12g10400OsAffx.31682.1.S1_at11/1112+5500645..5505129NB-ARC domain containing protein
LOC_Os12g10410Os.53446.1.S1_at11/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10410OsAffx.25541.1.S1_at1/1112+5507791..5513984NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19590.1.S1_at--370--2311Chr12:5488272..5488296 (25 bp)
AAAGGCGTTGACAAATTCACGATAG
LOC_Os12g10370
OsAffx.19590.1.S1_at--956--3131Chr12:5488285..5488309 (25 bp)
AATTCACGATAGTCCGGTTCCAAAT
LOC_Os12g10370
OsAffx.19590.1.S1_at--1019--6491Chr12:5488292..5488316 (25 bp)
GATAGTCCGGTTCCAAATTCACACC
LOC_Os12g10370
OsAffx.19590.1.S1_at--196--7891Chr12:5488300..5488324 (25 bp)
GGTTCCAAATTCACACCGAGTTGAT
LOC_Os12g10370
OsAffx.19590.1.S1_at--504--8871Chr12:5488321..5488345 (25 bp)
TGATGAGGTCAATCCTCGCAGCCTA
LOC_Os12g10370
OsAffx.19590.1.S1_at--946--5071Chr12:5488338..5488362 (25 bp)
GCAGCCTACAGTGCGGCGACAACGA
LOC_Os12g10370
OsAffx.19590.1.S1_at--419--8111Chr12:5488363..5488387 (25 bp)
GGACGACGACCACGCATAACAACGA
LOC_Os12g10370
OsAffx.19590.1.S1_at--612--5851Chr12:5488370..5488394 (25 bp)
GACCACGCATAACAACGAAGACGAT
LOC_Os12g10370
OsAffx.19590.1.S1_at--428--9031Chr12:5488459..5488483 (25 bp)
TGCACTACGCGACGCCGCAGCTGAT
LOC_Os12g10370
OsAffx.19590.1.S1_at--503--9611Chr12:5488592..5488616 (25 bp)
TCATCGAGGTCGAGGCCTACCACGT
LOC_Os12g10370
OsAffx.19590.1.S1_at--853--6131Chr12:5488597..5488621 (25 bp)
GAGGTCGAGGCCTACCACGTCGCGT
LOC_Os12g10370
Target Sequence 
AAAGGCGTTGACAAATTCACGATAGTCCGGTTCCAAATTCACACCGAGTTGATGAGGTCAATCCTCGCAGCCTACAGTGC
GGCGACAACGAGGACGACGACCACGCATAACAACGAAGACGATGACGGTGGCGAGGAGCTGGAGCAGCGCAGTGCCGGGC
TGCCGTCGGCGGTGGCGGAGGCGCTGGTGCACTACGCGACGCCGCAGCTGATGCGGCAGGAGGCCACCCTCCTCATCGAG
GTCGAGGCCTACCACGTCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis