Browse Element(s) Details


OsAffx.19599.1.S1_at

Description tigr:9632.m05005
TID=OsAffx.19599.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5176011/11hypothetical protein
LOC_Os12g107608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51720Os.28943.1.S1_x_at1/114+30430106..30433317retrotransposon protein, putative, unclassified
LOC_Os04g51730NANA4+30434108..30436108retrotransposon protein, putative, unclassified
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified
LOC_Os04g51760OsAffx.19599.1.S1_x_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760OsAffx.19599.1.S1_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760Os.53659.1.S1_at1/114+30452765..30454807hypothetical protein
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19599.1.S1_at--714--8392Chr12:5785378..5785402 (25 bp)
GGCGCCGACTTTTCCAATGGACGCT
LOC_Os12g10760
OsAffx.19599.1.S1_at--602--9173Chr12:5785339..5785363 (25 bp)
TGCCGCTTCCGCCTTGGAGACGAGC
LOC_Os12g10760
OsAffx.19599.1.S1_at--192--5933Chr12:5785297..5785321 (25 bp)
GAGCTTGTCGTTCTCGACGCGGTCA
LOC_Os12g10760
OsAffx.19599.1.S1_at--1108--4913Chr12:5785295..5785319 (25 bp)
GCTTGTCGTTCTCGACGCGGTCATC
LOC_Os12g10760
OsAffx.19599.1.S1_at--121--6013Chr12:5785185..5785209 (25 bp)
GAGAGGCGGCGTCGGACGAAACGAT
LOC_Os12g10760
OsAffx.19599.1.S1_at--123--5253Chr12:5785144..5785168 (25 bp)
GAATCAGCCATGCGAAAATACAGAA
LOC_Os12g10760
OsAffx.19599.1.S1_at--539--4593Chr12:5785133..5785157 (25 bp)
GCGAAAATACAGAAATACCCTTCCA
LOC_Os12g10760
OsAffx.19599.1.S1_at--518--3213Chr12:5785081..5785105 (25 bp)
CAAGGACGAGTTGGTACCTCGCGGT
LOC_Os12g10760
OsAffx.19599.1.S1_at--751--9631Chr04:30453374..30453398 (25 bp)
TCAGGGCGGGCTCTTATTTGATTCA
LOC_Os04g51760
OsAffx.19599.1.S1_at--95--1091Chr04:30453372..30453396 (25 bp)
AGGGCGGGCTCTTATTTGATTCATC
LOC_Os04g51760
OsAffx.19599.1.S1_at--629--4671Chr04:30453369..30453393 (25 bp)
GCGGGCTCTTATTTGATTCATCTGC
LOC_Os04g51760
Target Sequence 
GGCGCCGACTTTTCCAATGGACGCTCNGACATCAGCCGCTGCCGCTTCCGCCTTGGAGACGAGCTCCTCCTCGGCGGNGC
CGAGCTTGTCGTTCTCGACGCGGTCATCNGGGGCCGTCAGCTGCACNCTTCTCTTCTCCACGCTGGCGGTCGCCGTGGGG
AAAANTTCACCGGTGCNGAGATGGAGATGGAGAGAGAGGCGGCGTCGGACGAAACGATCNAAGTGGATAAGACNGAATCA
GCCATGCGAAAATACAGAAATACCCTTCCACCTCCACATCCTAATACANTGCCACNACAAGGACGAGTTGGTACCTCGCG
GTACCNAGCGATGACAGCCGTTGGATCCTATCCACTCAACGGTGACGATTTGNTACCGCTTTGGCCTGCTGTACGNNANT
TGCATGATCAGGGCGGGCTCTTATTTGATTCATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis