Browse Element(s) Details


OsAffx.19650.1.S1_at

Description tigr:9640.m01304
TID=OsAffx.19650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1350011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13470OsAffx.19648.1.S1_at11/1112+7559304..7560177hypothetical protein
LOC_Os12g13480NANA12+7563232..7563670hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_at4/1112+7571977..7574844hypothetical protein
LOC_Os12g13490OsAffx.18377.1.S1_x_at3/1112+7571977..7574844hypothetical protein
LOC_Os12g13500OsAffx.19650.1.S1_at11/1112+7580100..7580585hypothetical protein
LOC_Os12g13520OsAffx.14940.1.S1_x_at1/1112+7585029..7585565hypothetical protein
LOC_Os12g13530OsAffx.31727.1.S1_at11/1112+7589420..7591641hypothetical protein
LOC_Os12g13530OsAffx.9532.1.S1_x_at1/1112+7589420..7591641hypothetical protein
LOC_Os12g13540OsAffx.31728.1.S1_at11/1112+7597078..7597347hypothetical protein
LOC_Os12g13550Os.53109.1.S1_at11/1112+7599452..7604327NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19650.1.S1_at--647--4072Chr12:7580145..7580169 (25 bp)
CGAGATGAGGCAGGGATGGGCGACA
LOC_Os12g13500
OsAffx.19650.1.S1_at--401--7631Chr12:7580173..7580197 (25 bp)
GGGACAGTGGCATTCCATTGATCTC
LOC_Os12g13500
OsAffx.19650.1.S1_at--906--5651Chr12:7580175..7580199 (25 bp)
GACAGTGGCATTCCATTGATCTCCA
LOC_Os12g13500
OsAffx.19650.1.S1_at--230--3471Chr12:7580177..7580201 (25 bp)
CAGTGGCATTCCATTGATCTCCAGG
LOC_Os12g13500
OsAffx.19650.1.S1_at--606--1091Chr12:7580178..7580202 (25 bp)
AGTGGCATTCCATTGATCTCCAGGC
LOC_Os12g13500
OsAffx.19650.1.S1_at--966--7531Chr12:7580179..7580203 (25 bp)
GTGGCATTCCATTGATCTCCAGGCT
LOC_Os12g13500
OsAffx.19650.1.S1_at--209--4951Chr12:7580182..7580206 (25 bp)
GCATTCCATTGATCTCCAGGCTCAA
LOC_Os12g13500
OsAffx.19650.1.S1_at--129--91Chr12:7580184..7580208 (25 bp)
ATTCCATTGATCTCCAGGCTCAACA
LOC_Os12g13500
OsAffx.19650.1.S1_at--125--9251Chr12:7580186..7580210 (25 bp)
TCCATTGATCTCCAGGCTCAACAAA
LOC_Os12g13500
OsAffx.19650.1.S1_at--517--3591Chr12:7580188..7580212 (25 bp)
CATTGATCTCCAGGCTCAACAAAGG
LOC_Os12g13500
OsAffx.19650.1.S1_at--807--5831Chr12:7580192..7580216 (25 bp)
GATCTCCAGGCTCAACAAAGGGGTG
LOC_Os12g13500
Target Sequence 
CGAGATGAGGCAGGGATGGGCGACAAGGGGGACAGTGGCATTCCATTGATCTCCAGGCTCAACAAAGGGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis