Browse Element(s) Details


OsAffx.19653.1.S1_at

Description tigr:9640.m01318
TID=OsAffx.19653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1363011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13590Os.11598.1.S1_at11/1112+7627909..7641698Exocyst complex component Sec10, putative, expressed
LOC_Os12g13600NANA12+7645352..7645633hypothetical protein
LOC_Os12g13610OsAffx.19652.1.S1_at11/1112+7647146..7647834expressed protein
LOC_Os12g13620Os.40360.1.S1_x_at1/1112+7654913..7655626hypothetical protein
LOC_Os12g13630OsAffx.19653.1.S1_at11/1112+7660566..7661150hypothetical protein
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein
LOC_Os12g13660Os.54031.1.S1_at11/1112+7676115..7683511expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19653.1.S1_at--13--1311Chr12:7661093..7661117 (25 bp)
AGATGTGTGCCCGAGGCCCAAAAAT
LOC_Os12g13630
OsAffx.19653.1.S1_at--723--2291Chr12:7661072..7661096 (25 bp)
AAATGGTGGATCTGCACGCCCAAGA
LOC_Os12g13630
OsAffx.19653.1.S1_at--771--1811Chr12:7661057..7661081 (25 bp)
ACGCCCAAGACCCAACAAACAGTGG
LOC_Os12g13630
OsAffx.19653.1.S1_at--280--2411Chr12:7661041..7661065 (25 bp)
AAACAGTGGTCCCATCTGCTCGAGG
LOC_Os12g13630
OsAffx.19653.1.S1_at--635--891Chr12:7661019..7661043 (25 bp)
AGGCCCGACGGCGACAGATCAAGTG
LOC_Os12g13630
OsAffx.19653.1.S1_at--750--2851Chr12:7660999..7661023 (25 bp)
AAGTGCTCCCGAGGCAACGCAGTGA
LOC_Os12g13630
OsAffx.19653.1.S1_at--1103--3451Chr12:7660980..7661004 (25 bp)
CAGTGACAGATCTGCGTGCCCGAGA
LOC_Os12g13630
OsAffx.19653.1.S1_at--404--3791Chr12:7660969..7660993 (25 bp)
CTGCGTGCCCGAGACCCAAAAATGG
LOC_Os12g13630
OsAffx.19653.1.S1_at--177--811Chr12:7660948..7660972 (25 bp)
ATGGTGGATCCGCATGCCCAAGGCC
LOC_Os12g13630
OsAffx.19653.1.S1_at--830--9451Chr12:7660890..7660914 (25 bp)
TCGGCCATCATCATTGTTGCTGTTG
LOC_Os12g13630
OsAffx.19653.1.S1_at--160--7131Chr12:7660866..7660890 (25 bp)
GTCATTGTCGTTGCGGTCGATGTCG
LOC_Os12g13630
Target Sequence 
AGATGTGTGCCCGAGGCCCAAAAATGGTGGATCTGCACGCCCAAGACCCAACAAACAGTGGTCCCATCTGCTCGAGGCCC
GACGGCGACAGATCAAGTGCTCCCGAGGCAACGCAGTGACAGATCTGCGTGCCCGAGACCCAAAAATGGTGGATCCGCAT
GCCCAAGGCCCGACGGCAGAATCCCGCTCACATCGCCGTCGTCTCGGCCATCATCATTGTTGCTGTTGTCATTGTCGTTG
CGGTCGATGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis