Browse Element(s) Details


OsAffx.19668.1.S1_at

Description tigr:9640.m01407
TID=OsAffx.19668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1450010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14460Os.27691.1.S1_x_at1/1112+8247715..8252280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.2.S1_x_at3/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.1.S1_x_at1/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14480OsAffx.19666.1.S1_at11/1112+8263718..8267530Protein kinase domain containing protein
LOC_Os12g14490NANA12+8269372..8271512hypothetical protein
LOC_Os12g14500OsAffx.19668.1.S1_at10/1112+8275679..8279789hypothetical protein
LOC_Os12g14510OsAffx.31741.1.S1_at11/1112+8280787..8281454hypothetical protein
LOC_Os12g14520NANA12+8285550..8285942hypothetical protein
LOC_Os12g14530OsAffx.6017.1.S1_at1/1112+8293493..8296441hypothetical protein
LOC_Os12g14540Os.51323.1.S1_at11/1112+8298821..8299399expressed protein
LOC_Os12g14550OsAffx.31742.1.S1_at10/1112+8303801..8305148hypothetical protein
LOC_Os12g14550Os.27790.1.A1_at3/1112+8303801..8305148hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19668.1.S1_at--1093--5111Chr12:8275729..8275751 (23 bp)
GCACATGATAGCAAACCCTGATGAG
LOC_Os12g14500
OsAffx.19668.1.S1_at--213--551Chr12:8278491..8278515 (25 bp)
ATCCCTGAAGGTGCTCTATGGAGCA
LOC_Os12g14500
OsAffx.19668.1.S1_at--922--971Chr12:8278543..8278567 (25 bp)
AGGAGCAGATGAAATCCCTGAAGGT
LOC_Os12g14500
OsAffx.19668.1.S1_at--22--1051Chr12:8278564..8278588 (25 bp)
AGGTGCTTTATGAGCGCCCAAAATG
LOC_Os12g14500
OsAffx.19668.1.S1_at--1023--8811Chr12:8278672..8278696 (25 bp)
TGATTCTGTGGAGCAGGGACACGCA
LOC_Os12g14500
OsAffx.19668.1.S1_at--709--2971Chr12:8278699..8278723 (25 bp)
AATGCTGGCTAAGCACCGACGACGA
LOC_Os12g14500
OsAffx.19668.1.S1_at--1008--2191Chr12:8278723..8278747 (25 bp)
ACAAAGACGCGCACGAGCTGAGGAA
LOC_Os12g14500
OsAffx.19668.1.S1_at--478--1871Chr12:8278735..8278759 (25 bp)
ACGAGCTGAGGAATGATGCCGCGCC
LOC_Os12g14500
OsAffx.19668.1.S1_at--292--4151NONE
CGCGCGTGAAGGACGCATCATCTGT
NONE
OsAffx.19668.1.S1_at--1115--3551Chr12:8279512..8279536 (25 bp)
CATCATCTGTGTTGGCGGTATGTCA
LOC_Os12g14500
OsAffx.19668.1.S1_at--886--7851Chr12:8279528..8279552 (25 bp)
GGTATGTCATGAGGCCCTTCGAGCG
LOC_Os12g14500
Target Sequence 
GCACATGATAGCAAACCCTGATGAGGATGGTGAAGATGAAATCCCTGAAGGTGCTCTATGGAGCAAAGTAGAAGGAGCAG
ATGAAGGCATGAAGGAGCAGATGAAATCCCTGAAGGTGCTTTATGAGCGCCCAAAATGCATTGGGGGGAGAAGACTGCGG
CAGCGGCAGATGATGTCGGGCTTGGGGGATGGACAGTTTGTGGCAGTGTTGGCAATGCTGCTGATTCTGTGGAGCAGGGA
CACGCAAGAATGCTGGCTAAGCACCGACGACGACAAAGACGCGCACGAGCTGAGGAATGATGCCGCGCCGCGCGTGAAGG
ACGCATCATCTGTGTTGGCGGTATGTCATGAGGCCCTTCGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis